Tutorials

Welcome to the Phenotypic tutorial section! These tutorials provide in-depth examples and step-by-step guides to help you master image processing concepts using Phenotypic.

Tutorial Topics

• 1. Getting Started
  • Processing your first image
• 2. Using ImagePipelines to process batches
  • Processing your first image
  • HeavyGitterPipeline
  • Saving your pipeline
  • Processing lots of images
• 3. Understanding the Image Class: Data Components and Accessors
  • Learning Objectives
  • Loading an Image and Basic Properties
  • RGB Component: Multichannel Color Data
  • Gray Component: Grayscale Representation
  • Enhanced Gray Component: Mutable Processing Copy
  • Object Mask and Object Map: Detection Results
  • Metadata: Image Information Storage
  • Practical Tips and Best Practices
• 4. Working with GridImage: Grid-Specific Features
  • Prerequisites
  • What Makes GridImage Special?
  • When to Use GridImage
  • Setup: Import Libraries
  • Part 2: Grid-Specific Components
  • Part 4: Accessing Grid Information
  • Part 5: Working with Grid Sections
  • Part 6: Advanced Grid Visualization
  • Part 8: Making Measurements with Grid Data
  • Part 9: Manual Grid Control (Advanced)
  • Part 10: Alternative Loading Method
  • Summary and Key Takeaways
  • Additional Resources
• 5. Make your own ImagePipeline
  • Introduction to ImageOperations
• 6. Fitting Logistic Growth Curves
  • Background
  • Overview
  • Adding in metadata post-analysis for downstream processing
  • Adding in metadata like strain name
  • Filtering and correction
  • Fit model
  • Display results