Tutorials#
Whether you’re installing PhenoTypic for the first time, working through the notebook learning path, batch-processing a directory of plates from the shell, or taking a screenshot tour of the GUI hub, the tutorials are organized into four tracks. Pick the one that matches how you plan to use PhenoTypic.
Install PhenoTypic, set up extras ([gui], [torch]), verify your
install, and launch the GUI hub for the first time.
Ten guided notebooks that take you from loading your first plate image to building grid-aware pipelines and detecting filamentous fungi.
The four --mode execution modes, the parameters that matter, and how
to batch-process a directory of plates locally or on SLURM.
A screenshot-driven walkthrough of the PhenoTypic hub — sandbox setup, pipeline builder, run console, results viewer, and analysis sub-app.