Skip to main content
Ctrl+K
PhenoTypic PhenoTypic
  • User Guide
  • API Reference
  • Developer Guide
  • Downloads
  • GitHub
  • User Guide
  • API Reference
  • Developer Guide
  • Downloads
  • GitHub

Section Navigation

Image

  • phenotypic.Image
  • phenotypic.Image.rgb
  • phenotypic.Image.gray
  • phenotypic.Image.enh_gray
  • phenotypic.Image.objmask
  • phenotypic.Image.objmap
  • phenotypic.Image.objects
  • phenotypic.Image.color

GridImage

  • phenotypic.GridImage
  • phenotypic.GridImage.grid

Modules

  • phenotypic.abc_
    • phenotypic.abc_.MeasureFeatures
    • phenotypic.abc_.ImageOperation
    • phenotypic.abc_.ImageEnhancer
    • phenotypic.abc_.ImageCorrector
    • phenotypic.abc_.ObjectDetector
    • phenotypic.abc_.ObjectRefiner
    • phenotypic.abc_.ThresholdDetector
    • phenotypic.abc_.GridOperation
    • phenotypic.abc_.GridFinder
    • phenotypic.abc_.GridCorrector
    • phenotypic.abc_.GridObjectRefiner
    • phenotypic.abc_.GridMeasureFeatures
    • phenotypic.abc_.BaseOperation
    • phenotypic.abc_.MeasurementInfo
    • phenotypic.abc_.GridObjectDetector
    • phenotypic.abc_.PrefabPipeline
  • phenotypic.analysis
    • phenotypic.analysis.EdgeCorrector
    • phenotypic.analysis.LogGrowthModel
    • phenotypic.analysis.TukeyOutlierRemover
  • phenotypic.correction
    • phenotypic.correction.GridAligner
  • phenotypic.data
    • phenotypic.data.load_synthetic_colony
    • phenotypic.data.load_synthetic_detection_image
    • phenotypic.data.make_synthetic_colony
    • phenotypic.data.make_synthetic_plate
    • phenotypic.data.load_plate_12hr
    • phenotypic.data.load_plate_72hr
    • phenotypic.data.load_plate_series
    • phenotypic.data.load_early_colony
    • phenotypic.data.load_faint_early_colony
    • phenotypic.data.load_colony
    • phenotypic.data.load_smear_plate_12hr
    • phenotypic.data.load_smear_plate_24hr
  • phenotypic.detect
    • phenotypic.detect.CannyDetector
    • phenotypic.detect.RoundPeaksDetector
    • phenotypic.detect.IsodataDetector
    • phenotypic.detect.LiDetector
    • phenotypic.detect.MeanDetector
    • phenotypic.detect.MinimumDetector
    • phenotypic.detect.OtsuDetector
    • phenotypic.detect.TriangleDetector
    • phenotypic.detect.WatershedDetector
    • phenotypic.detect.YenDetector
  • phenotypic.enhance
    • phenotypic.enhance.BilateralDenoise
    • phenotypic.enhance.BM3DDenoiser
    • phenotypic.enhance.CLAHE
    • phenotypic.enhance.ContrastStretching
    • phenotypic.enhance.GaussianBlur
    • phenotypic.enhance.GaussianSubtract
    • phenotypic.enhance.LaplaceEnhancer
    • phenotypic.enhance.MedianFilter
    • phenotypic.enhance.RankMedianEnhancer
    • phenotypic.enhance.RollingBallRemoveBG
    • phenotypic.enhance.SobelFilter
    • phenotypic.enhance.UnsharpMask
    • phenotypic.enhance.WhiteTophatEnhancer
  • phenotypic.grid
    • phenotypic.grid.AutoGridFinder
    • phenotypic.grid.ManualGridFinder
  • phenotypic.measure
    • phenotypic.measure.MeasureBounds
    • phenotypic.measure.MeasureColor
    • phenotypic.measure.MeasureIntensity
    • phenotypic.measure.MeasureShape
    • phenotypic.measure.MeasureSize
    • phenotypic.measure.MeasureTexture
    • phenotypic.measure.MeasureGridSpread
    • phenotypic.measure.MeasureGridLinRegStats
  • phenotypic.prefab
    • phenotypic.prefab.HeavyWatershedPipeline
    • phenotypic.prefab.HeavyOtsuPipeline
    • phenotypic.prefab.GridSectionPipeline
    • phenotypic.prefab.HeavyRoundPeaksPipeline
    • phenotypic.prefab.RoundPeaksPipeline
  • phenotypic.refine
    • phenotypic.refine.LowCircularityRemover
    • phenotypic.refine.SmallObjectRemover
    • phenotypic.refine.BorderObjectRemover
    • phenotypic.refine.CenterDeviationReducer
    • phenotypic.refine.MaskFill
    • phenotypic.refine.MaskOpener
    • phenotypic.refine.WhiteTophatModifier
    • phenotypic.refine.GridOversizedObjectRemover
    • phenotypic.refine.MinResidualErrorReducer
    • phenotypic.refine.ResidualOutlierRemover
    • phenotypic.refine.Skeletonize
    • phenotypic.refine.Thinning
  • phenotypic.tools
    • phenotypic.tools.timed_execution
    • phenotypic.tools.is_binary_mask
    • phenotypic.tools.HDF
    • phenotypic.tools.constants_
      • phenotypic.tools.constants_.BBOX
      • phenotypic.tools.constants_.GRID
      • phenotypic.tools.constants_.GRID_LINREG_STATS_EXTRACTOR
      • phenotypic.tools.constants_.IMAGE_MODE
      • phenotypic.tools.constants_.IMAGE_TYPES
      • phenotypic.tools.constants_.IO
      • phenotypic.tools.constants_.METADATA
      • phenotypic.tools.constants_.MPL
      • phenotypic.tools.constants_.OBJECT
      • phenotypic.tools.constants_.PIPE_STATUS
    • phenotypic.tools.exceptions_
      • phenotypic.tools.exceptions_.ArrayKeyValueShapeMismatchError
      • phenotypic.tools.exceptions_.DataIntegrityError
      • phenotypic.tools.exceptions_.EmptyImageError
      • phenotypic.tools.exceptions_.GridImageInputError
      • phenotypic.tools.exceptions_.IllegalAssignmentError
      • phenotypic.tools.exceptions_.IllegalElementAssignmentError
      • phenotypic.tools.exceptions_.ImageOperationError
      • phenotypic.tools.exceptions_.ImmutableComponentError
      • phenotypic.tools.exceptions_.InputShapeMismatchError
      • phenotypic.tools.exceptions_.InterfaceError
      • phenotypic.tools.exceptions_.InvalidHsvSchemaError
      • phenotypic.tools.exceptions_.InvalidMapValueError
      • phenotypic.tools.exceptions_.InvalidMaskScalarValueError
      • phenotypic.tools.exceptions_.InvalidMaskValueError
      • phenotypic.tools.exceptions_.InvalidShapeError
      • phenotypic.tools.exceptions_.MetadataKeySpacesError
      • phenotypic.tools.exceptions_.MetadataKeyValueError
      • phenotypic.tools.exceptions_.MetadataValueNonScalarError
      • phenotypic.tools.exceptions_.NoArrayError
      • phenotypic.tools.exceptions_.NoComponentError
      • phenotypic.tools.exceptions_.NoImageDataError
      • phenotypic.tools.exceptions_.NoObjectsError
      • phenotypic.tools.exceptions_.NoOutputError
      • phenotypic.tools.exceptions_.ObjectNotFoundError
      • phenotypic.tools.exceptions_.OperationFailedError
      • phenotypic.tools.exceptions_.OperationIntegrityError
      • phenotypic.tools.exceptions_.OutputValueError
      • phenotypic.tools.exceptions_.PhenoTypicError
      • phenotypic.tools.exceptions_.UUIDReassignmentError
      • phenotypic.tools.exceptions_.UnknownError
      • phenotypic.tools.exceptions_.UnsupportedFileTypeError
      • phenotypic.tools.exceptions_.UnsupportedImageFormat
      • phenotypic.tools.exceptions_.UuidAssignmentError
    • phenotypic.tools.colourspaces_
  • phenotypic.util
    • phenotypic.util.geometric_median
    • phenotypic.util.GridApply
  • API Reference
  • phenotypic.tools
  • phenotypic.tools.is_binary_mask

phenotypic.tools.is_binary_mask#

phenotypic.tools.is_binary_mask(arr: numpy.ndarray)[source]#
Parameters:

arr (numpy.ndarray)

On this page
  • is_binary_mask()

This Page

  • Show Source

© Copyright 2025, ExFAB BioFoundry.

Created using Sphinx 8.1.3.

Built with the PyData Sphinx Theme 0.16.1.