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Image
phenotypic.Image
phenotypic.Image.rgb
phenotypic.Image.gray
phenotypic.Image.enh_gray
phenotypic.Image.objmask
phenotypic.Image.objmap
phenotypic.Image.objects
phenotypic.Image.color
GridImage
phenotypic.GridImage
phenotypic.GridImage.grid
Modules
phenotypic.abc_
phenotypic.abc_.MeasureFeatures
phenotypic.abc_.ImageOperation
phenotypic.abc_.ImageEnhancer
phenotypic.abc_.ImageCorrector
phenotypic.abc_.ObjectDetector
phenotypic.abc_.ObjectRefiner
phenotypic.abc_.ThresholdDetector
phenotypic.abc_.GridOperation
phenotypic.abc_.GridFinder
phenotypic.abc_.GridCorrector
phenotypic.abc_.GridObjectRefiner
phenotypic.abc_.GridMeasureFeatures
phenotypic.abc_.BaseOperation
phenotypic.abc_.MeasurementInfo
phenotypic.abc_.GridObjectDetector
phenotypic.abc_.PrefabPipeline
phenotypic.analysis
phenotypic.analysis.EdgeCorrector
phenotypic.analysis.LogGrowthModel
phenotypic.analysis.TukeyOutlierRemover
phenotypic.correction
phenotypic.correction.GridAligner
phenotypic.data
phenotypic.data.load_synthetic_colony
phenotypic.data.load_synthetic_detection_image
phenotypic.data.make_synthetic_colony
phenotypic.data.make_synthetic_plate
phenotypic.data.load_plate_12hr
phenotypic.data.load_plate_72hr
phenotypic.data.load_plate_series
phenotypic.data.load_early_colony
phenotypic.data.load_faint_early_colony
phenotypic.data.load_colony
phenotypic.data.load_smear_plate_12hr
phenotypic.data.load_smear_plate_24hr
phenotypic.detect
phenotypic.detect.CannyDetector
phenotypic.detect.RoundPeaksDetector
phenotypic.detect.IsodataDetector
phenotypic.detect.LiDetector
phenotypic.detect.MeanDetector
phenotypic.detect.MinimumDetector
phenotypic.detect.OtsuDetector
phenotypic.detect.TriangleDetector
phenotypic.detect.WatershedDetector
phenotypic.detect.YenDetector
phenotypic.enhance
phenotypic.enhance.BilateralDenoise
phenotypic.enhance.BM3DDenoiser
phenotypic.enhance.CLAHE
phenotypic.enhance.ContrastStretching
phenotypic.enhance.GaussianBlur
phenotypic.enhance.GaussianSubtract
phenotypic.enhance.LaplaceEnhancer
phenotypic.enhance.MedianFilter
phenotypic.enhance.RankMedianEnhancer
phenotypic.enhance.RollingBallRemoveBG
phenotypic.enhance.SobelFilter
phenotypic.enhance.UnsharpMask
phenotypic.enhance.WhiteTophatEnhancer
phenotypic.grid
phenotypic.grid.AutoGridFinder
phenotypic.grid.ManualGridFinder
phenotypic.measure
phenotypic.measure.MeasureBounds
phenotypic.measure.MeasureColor
phenotypic.measure.MeasureIntensity
phenotypic.measure.MeasureShape
phenotypic.measure.MeasureSize
phenotypic.measure.MeasureTexture
phenotypic.measure.MeasureGridSpread
phenotypic.measure.MeasureGridLinRegStats
phenotypic.prefab
phenotypic.prefab.HeavyWatershedPipeline
phenotypic.prefab.HeavyOtsuPipeline
phenotypic.prefab.GridSectionPipeline
phenotypic.prefab.HeavyRoundPeaksPipeline
phenotypic.prefab.RoundPeaksPipeline
phenotypic.refine
phenotypic.refine.LowCircularityRemover
phenotypic.refine.SmallObjectRemover
phenotypic.refine.BorderObjectRemover
phenotypic.refine.CenterDeviationReducer
phenotypic.refine.MaskFill
phenotypic.refine.MaskOpener
phenotypic.refine.WhiteTophatModifier
phenotypic.refine.GridOversizedObjectRemover
phenotypic.refine.MinResidualErrorReducer
phenotypic.refine.ResidualOutlierRemover
phenotypic.refine.Skeletonize
phenotypic.refine.Thinning
phenotypic.tools
phenotypic.tools.timed_execution
phenotypic.tools.is_binary_mask
phenotypic.tools.HDF
phenotypic.tools.constants_
phenotypic.tools.constants_.BBOX
phenotypic.tools.constants_.GRID
phenotypic.tools.constants_.GRID_LINREG_STATS_EXTRACTOR
phenotypic.tools.constants_.IMAGE_MODE
phenotypic.tools.constants_.IMAGE_TYPES
phenotypic.tools.constants_.IO
phenotypic.tools.constants_.METADATA
phenotypic.tools.constants_.MPL
phenotypic.tools.constants_.OBJECT
phenotypic.tools.constants_.PIPE_STATUS
phenotypic.tools.exceptions_
phenotypic.tools.exceptions_.ArrayKeyValueShapeMismatchError
phenotypic.tools.exceptions_.DataIntegrityError
phenotypic.tools.exceptions_.EmptyImageError
phenotypic.tools.exceptions_.GridImageInputError
phenotypic.tools.exceptions_.IllegalAssignmentError
phenotypic.tools.exceptions_.IllegalElementAssignmentError
phenotypic.tools.exceptions_.ImageOperationError
phenotypic.tools.exceptions_.ImmutableComponentError
phenotypic.tools.exceptions_.InputShapeMismatchError
phenotypic.tools.exceptions_.InterfaceError
phenotypic.tools.exceptions_.InvalidHsvSchemaError
phenotypic.tools.exceptions_.InvalidMapValueError
phenotypic.tools.exceptions_.InvalidMaskScalarValueError
phenotypic.tools.exceptions_.InvalidMaskValueError
phenotypic.tools.exceptions_.InvalidShapeError
phenotypic.tools.exceptions_.MetadataKeySpacesError
phenotypic.tools.exceptions_.MetadataKeyValueError
phenotypic.tools.exceptions_.MetadataValueNonScalarError
phenotypic.tools.exceptions_.NoArrayError
phenotypic.tools.exceptions_.NoComponentError
phenotypic.tools.exceptions_.NoImageDataError
phenotypic.tools.exceptions_.NoObjectsError
phenotypic.tools.exceptions_.NoOutputError
phenotypic.tools.exceptions_.ObjectNotFoundError
phenotypic.tools.exceptions_.OperationFailedError
phenotypic.tools.exceptions_.OperationIntegrityError
phenotypic.tools.exceptions_.OutputValueError
phenotypic.tools.exceptions_.PhenoTypicError
phenotypic.tools.exceptions_.UUIDReassignmentError
phenotypic.tools.exceptions_.UnknownError
phenotypic.tools.exceptions_.UnsupportedFileTypeError
phenotypic.tools.exceptions_.UnsupportedImageFormat
phenotypic.tools.exceptions_.UuidAssignmentError
phenotypic.tools.colourspaces_
phenotypic.util
phenotypic.util.geometric_median
phenotypic.util.GridApply
API Reference
phenotypic.tools
phenotypic.tools.colourspaces_
phenotypic.tools.colourspaces_
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