phenotypic.tools.exceptions_#

PhenoTypic Exceptions

This module contains all exceptions used throughout the PhenoTypic library. Exceptions are organized by module and functionality.

exception phenotypic.tools.exceptions_.ArrayKeyValueShapeMismatchError[source]#

Bases: ValueError

Exception raised when the shape of the other_image doesn’t match the key’s section.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.DataIntegrityError(component, operation, image_name=None)[source]#

Bases: AttributeError

Exception raised when data integrity is compromised.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.EmptyImageError[source]#

Bases: AttributeError

Exception raised when no image data is loaded.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.GridImageInputError[source]#

Bases: ValueError

Exception raised when a non-GriddedImage object is provided as arr.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.IllegalAssignmentError(attr)[source]#

Bases: ValueError

Exception raised when trying to directly assign a new object to a protected attribute.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.IllegalElementAssignmentError(component_name)[source]#

Bases: ImmutableComponentError

Exception raised when trying to change rgb/gray elements directly.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.ImageOperationError[source]#

Bases: PhenoTypicError

Base exception for image operation errors.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.ImmutableComponentError[source]#

Bases: AttributeError

Base exception for immutable component errors.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.InputShapeMismatchError(param_name)[source]#

Bases: ValueError

Exception raised when arr shape doesn’t match the image gray.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.InterfaceError[source]#

Bases: NotImplementedError, PhenoTypicError

Exception raised when an abc_ method is called when it’s not supposed to be.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.InvalidHsvSchemaError(imformat)[source]#

Bases: AttributeError

Exception raised when trying to convert to HSV from a non-RGB imformat.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.InvalidMapValueError(value_type)[source]#

Bases: ValueError

Exception raised when trying to set object map with invalid other_image type.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.InvalidMaskScalarValueError[source]#

Bases: ValueError

Exception raised when trying to set mask with invalid scalar other_image.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.InvalidMaskValueError(value_type)[source]#

Bases: ValueError

Exception raised when trying to set mask with invalid other_image type.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.InvalidShapeError(component)[source]#

Bases: ValueError

Exception raised when a shape mismatch occurs.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.MetadataKeySpacesError[source]#

Bases: TypeError

Exception raised when metadata key contains spaces.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.MetadataKeyValueError(type_received)[source]#

Bases: ValueError

Exception raised when metadata key is not a string.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.MetadataValueNonScalarError(type_value)[source]#

Bases: TypeError

Exception raised when metadata other_image is not scalar.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.NoArrayError[source]#

Bases: AttributeError

Exception raised when no array is found.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.NoComponentError(component)[source]#

Bases: AttributeError

Exception raised when a required object is missing.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.NoImageDataError[source]#

Bases: AttributeError

Exception raised when no image data is loaded.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.NoObjectsError(image_name=None)[source]#

Bases: AttributeError

Exception raised when no objects are found in an image.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.NoOutputError[source]#

Bases: PhenoTypicError

Exception raised when no output was returned in an operation.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.ObjectNotFoundError(label)[source]#

Bases: AttributeError

Exception raised when an object with a specified label is not found.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.OperationFailedError(operation, image_name, err_type, message)[source]#

Bases: ImageOperationError

Exception raised when an operation fails.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.OperationIntegrityError(opname: str, component: str, image_name=None)[source]#

Bases: AttributeError

Exception raised when an operation attempts to change a component it shouldn’t.

Parameters:

  • opname (str)

  • component (str)

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.OutputValueError(expected_type)[source]#

Bases: PhenoTypicError

Exception raised when output is not of the expected type.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.PhenoTypicError[source]#

Bases: Exception

Base exception class for all PhenoTypic errors.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.UUIDReassignmentError[source]#

Bases: AttributeError

Exception raised when trying to change the UUID metadata.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

exception phenotypic.tools.exceptions_.UnknownError(message='An unknown error occurred.')[source]#

Bases: PhenoTypicError

Exception raised when an unknown error occurs.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.UnsupportedFileTypeError(suffix)[source]#

Bases: ValueError

Exception raised when trying to read an unsupported file type.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.UnsupportedImageFormat(imformat)[source]#

Bases: ValueError

Represents an error when an unsupported imformat format is detected.

This error is raised when a specified imformat format is not supported by the application or library that utilizes this exception class.

Parameters:

schema (str) – The imformat format that triggered this exception.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
exception phenotypic.tools.exceptions_.UuidAssignmentError[source]#

Bases: AttributeError

Exception raised when trying to change the UUID of an image.

with_traceback()#

Exception.with_traceback(tb) – set self.__traceback__ to tb and return self.

args#
name#

attribute name

obj#

object

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