phenotypic.data.make_synthetic_filamentous_plate

phenotypic.data.make_synthetic_filamentous_plate(nrows: int = 8, ncols: int = 12, plate_h: int = 2048, plate_w: int = 3072, bit_depth: int = 8, colony_rgb: Tuple[float, float, float] = (0.96, 0.9, 0.85), agar_rgb: Tuple[float, float, float] = (0.55, 0.56, 0.54), seed: int = 1, spacing_factor: float = 0.85, colony_size_variation: float = 0.15, filament_density: float = 100.0, filament_reach: float = 2.2) → numpy.ndarray

Generate a synthetic plate with filamentous (hairy/branching) colonies.

Parameters:

• nrows (int)

• ncols (int)

• plate_h (int)

• plate_w (int)

• bit_depth (int)

• colony_rgb (Tuple[float, float, float])

• agar_rgb (Tuple[float, float, float])

• seed (int)

• spacing_factor (float)

• colony_size_variation (float)

• filament_density (float)

• filament_reach (float)

Return type:

numpy.ndarray