Source code for phenotypic.prefab._spimager_pipeline

from phenotypic.abc_ import PrefabPipeline
from phenotypic.correction import ImageCropper
from phenotypic.correction import StableDenoise
from phenotypic.enhance import SubtractGaussian
from phenotypic.detect import OtsuDetector
from phenotypic.measure import MeasureSize




class SpImagerPipeline(PrefabPipeline):
    """
    A prefabricated pipeline for light image processing task for images from
    the S&P Robotics Imager
    """

    def __init__(self):
        super().__init__(
                ops=[
                    ImageCropper(
                            left=650,
                            right=650,
                            top=600,
                            bottom=600
                    ),
                    StableDenoise(),
                    SubtractGaussian(sigma=500),
                    OtsuDetector()
                ],
                meas=[MeasureSize()]
        )