Command-Line Tutorials
======================

The ``python -m phenotypic`` CLI runs an ``ImagePipeline`` over a directory of
plate images without writing any Python. Start with the execution modes — they
decide what a run produces and which flags it accepts — then work through the
batch-processing recipe.

.. toctree::
   :maxdepth: 1
   :caption: Learning Path

   pages/cli_modes
   pages/cli_batch_processing

Every flag accepted by the CLI, plus the separate tuning CLI, is catalogued in
the :doc:`CLI Reference </api_reference/cli_reference>`.