phenotypic.sdk\_
================

.. automodule:: phenotypic.sdk_
   :no-index:

   
   
   

   
   
   .. rubric:: Functions

   .. autosummary::
      :toctree:
      :nosignatures:
   
      atomic_write_bytes
      atomic_write_json
      atomic_write_parquet
      atomic_write_text
      atomic_write_with_writer
      canonical_metadata_order
      ensure_metadata_prefix
      is_binary_mask
      is_metadata_header
      metadata_category_for_label
      metadata_category_prefixes
      metadata_only_mask
      order_measurement_columns
      timed_execution
      analysis_full_parquet_path
      analysis_manifest_path
      analysis_html_path
      analysis_scatter_json_path
      best_pipeline_path
      best_params_path
      bytes_fingerprint
      chunk_lock_path
      chunk_manifest_path
      chunk_parquet_filename
      chunk_parquet_path
      chunk_state_path
      chunks_dir
      checkpoint_lock_filename
      checkpoint_lock_path
      dashboard_html_path
      dataset_hdf_dir
      dataset_measurements_dir
      dataset_overlays_dir
      dataset_results_dir
      overlays_dir
      plots_dir
      curation_labels_parquet_path
      custom_categories_json_path
      default_output_dir_name
      deliverables_dir
      error_analysis_csv_path
      error_analysis_html_path
      error_analysis_parquet_path
      error_category_parquet_path
      errors_dir
      event_log_path
      ensure_typed_json_suffix
      failures_jsonl_path
      file_fingerprint
      generalization_path
      generation_staging_path
      gui_launch_owner_path
      has_config_suffix
      job_metadata_path
      load_image_from_hdf
      load_master_measurements
      logs_dir
      manifest_json_path
      master_measurements_csv_path
      master_measurements_parquet_path
      measurements_by_feature_dir
      measurements_csv_path
      measurements_parquet_path
      migration_backup_dir
      migration_backup_path
      migration_lock_path
      migration_receipt_path
      named_analysis_csv_path
      named_analysis_parquet_path
      named_analysis_paths
      metadata_csv_deliverable_path
      matches_any_suffix
      migrate_legacy_machine_state
      migrate_legacy_qc
      clear_machine_state
      overlay_manifest_path
      param_importance_path
      pareto_best_pipeline_path
      pareto_dir
      pareto_front_parquet_path
      pareto_importance_path
      phenotypic_cache_dir
      phenotypic_cache_pipeline_json_path
      pipeline_json_path
      pipeline_publication_lock
      pipeline_publication_lock_path
      paths_fingerprint
      processing_report_html_path
      processing_state_path
      progress_dir
      qc_dir
      qc_duckdb_path
      qc_review_state_path
      readme_md_path
      read_run_manifest
      recompile_dir
      recompile_status_dir
      rembi_manifest_path
      resolve_best_pipeline_path
      resolve_event_log_path
      resolve_execution_mode
      resolve_manifest_json_path
      resolve_pipeline_config_path
      resolve_processing_state_path
      resolve_progress_dir
      resolve_qc_dir
      resolve_split_assignment_path
      resolve_study_db_path
      resolve_tuning_spec_path
      results_dir
      run_completion_marker_path
      sentinel_resubmitted_path
      shard_parquet_filename
      slurm_scripts_dir
      source_cache_key
      task_status_filename
      task_status_path
      trials_parquet_path
      tune_cache_dir
      tune_cache_run_marker_path
      tune_cache_split_assignment_path
      tune_cache_splits_dir
      tune_cache_study_db_path
      tuning_spec_path
      verified_parquet_path
      validate_analysis_id
   
   

   
   
   .. rubric:: Classes

   .. autosummary::
      :toctree:
      :template: class.rst
      :nosignatures:
   
      FootprintMixin
      GridInferenceMixin
      HDF
      InputLayerMixin
      LazyWidgetMixin
      NormControlMixin
      NormalizedOutputMixin
      ChunkManifestKey
      ChunkStateKey
      DashboardManifestKey
      DashboardManifestSlurmInfoKey
      EnvVar
      HdfAttr
      JobMetadataKey
      ModulePath
      ProcessingStateKey
      AnalysisArtifactPaths
      BundleLayout
   
   

   
   
   



.. rubric:: Modules

.. autosummary::
   :toctree:
   :template: module.rst
   :recursive:

   colourspace
   constants_
   exceptions_
   napari_
   register
   slurm
   slurm_