PhenoTypic#
A modular framework for bioimage analysis and visualization
Welcome to PhenoTypic’s documentation. Whether you’re detecting colonies for the first time or building custom analysis pipelines, these guides will help you get started.
Step-by-step lessons that take you from loading your first plate image to building complete analysis pipelines. Start here if you’re new.
How-to recipes for specific problems, conceptual explanations of how and why things work, and guides for extending PhenoTypic with your own operations, detectors, and dashboards.
A quick reference for every column produced by PhenoTypic’s per-object measurement operators — useful if you’ve received processed data and need to know what a column means.
Detailed reference for every public class, function, and parameter. Includes CLI reference, configuration, and glossary.
Notice a problem or need help? Open an issue on GitHub and add a label so we can help you faster.