Metadata#

IMAGE #

Category: **Metadata**#
Column label	Description	Type
`Metadata_UUID`	The unique identifier of the image.	Identity / design
`Metadata_ImageName`	The name of the image.	Identity / design
`Metadata_ParentImageName`	The name of the parent image.	Identity / design
`Metadata_ParentUUID`	The UUID of the parent image.	Identity / design
`Metadata_ImageFormat`	The format of the image.	Identity / design
`Metadata_ImageType`	The type of the image.	Identity / design
`Metadata_BitDepth`	The bit depth of the image.	Identity / design
`Metadata_FileSuffix`	The file suffix of the original file the image was imported from	Identity / design

Category: **Metadata**#
Column label	Description	Type
`Metadata_Organism`	Species or organism name (e.g. Saccharomyces cerevisiae).	Identity / design
`Metadata_Strain`	Strain name or identifier (e.g. BY4741).	Identity / design
`Metadata_Genotype`	Genotype description of the strain.	Identity / design
`Metadata_Background`	Genetic background or parent strain.	Identity / design
`Metadata_Allele`	Specific allele or mutation under study.	Identity / design
`Metadata_Plasmid`	Plasmid carried by the sample.	Identity / design
`Metadata_SelectionMarker`	Selectable marker gene (e.g. URA3, KanMX).	Identity / design
`Metadata_MatingType`	Mating type for yeast (e.g. MATa, MATalpha).	Identity / design
`Metadata_Ploidy`	Ploidy of the organism (e.g. haploid, diploid).	Identity / design

Category: **Metadata**#
Column label	Description	Type
`Metadata_SampleID`	Unique identifier for the biological sample.	Identity / design
`Metadata_BioReplicate`	Biological replicate identifier. Biological replicates are parallel measurements of biologically distinct samples that capture random biological variation.	Identity / design
`Metadata_CondReplicate`	Experimental Conditional replicate identifier. An example of an experimental replicate would be a pinned colony of the same strain on another plate being subjected to the same conditions.	Identity / design
`Metadata_TechReplicate`	Technical replicate identifier.	Identity / design
`Metadata_Clone`	Clone or isolate identifier.	Identity / design
`Metadata_LibraryID`	Source library or collection identifier (e.g. a deletion collection).	Identity / design
`Metadata_SourcePlate`	Identifier of the source plate the sample was pinned from.	Identity / design
`Metadata_SourceWell`	Well position on the source plate (e.g. A1). This can potentially be distinct from Grid values when using irregular or sparse grid parameters.	Identity / design
`Metadata_Barcode`	Molecular or sample barcode.	Identity / design
`Metadata_Control`	Control designation (e.g. positive, negative, blank).	Identity / design

Category: **Metadata**#
Column label	Description	Type
`Metadata_PlateID`	Identifier of the assay/imaging plate.	Identity / design
`Metadata_Batch`	Experimental batch grouping.	Identity / design
`Metadata_ArrayDensity`	Colony array density, i.e. wells per plate (e.g. 96, 384, 1536).	Identity / design
`Metadata_IncubatorPosition`	Physical position of the plate within the incubator.	Identity / design
`Metadata_Configuration`	The sample’s array position configuration. Different configurations can be used to help identify and mitigate edge/neighbor effects.	Identity / design

Category: **Metadata**#
Column label	Description	Type
`Metadata_Media`	Growth medium name (e.g. YPD, SC, LB).	Identity / design
`Metadata_CarbonSource`	Primary carbon source (e.g. glucose, galactose).	Identity / design
`Metadata_NitrogenSource`	Primary nitrogen source.	Identity / design
`Metadata_pH`	pH of the growth medium.	Identity / design
`Metadata_Supplement`	Medium supplement or additive.	Identity / design
`Metadata_Antibiotic`	Antibiotic added to the medium.	Identity / design
`Metadata_Inducer`	Inducing agent (e.g. galactose, IPTG, doxycycline).	Identity / design
`Metadata_Treatment`	Experimental treatment or perturbation.	Identity / design
`Metadata_Compound`	Chemical compound or drug applied.	Identity / design
`Metadata_Concentration`	Concentration of the compound or treatment.	Identity / design
`Metadata_Dose`	Dose applied to the sample.	Identity / design
`Metadata_Stress`	Applied stress condition (e.g. heat, osmotic, oxidative).	Identity / design
`Metadata_Salinity`	Salt Salinity	Identity / design

Category: **Metadata**#
Column label	Description	Type
`Metadata_Time`	Elapsed growth time.	Identity / design
`Metadata_TimeUnit`	Unit for the Time value (e.g. hours, days).	Identity / design
`Metadata_Timepoint`	Human-readable label for a discrete timepoint in a time series (e.g. ‘24h’, ‘stationary’); may be non-numeric. For the integer capture ordinal, use FrameIndex.	Identity / design
`Metadata_FrameIndex`	1-based ordinal index of the image within the time-course capture sequence; the monotonic-integer companion to the free-form Timepoint label.	Identity / design
`Metadata_Day`	Day index of the experiment.	Identity / design
`Metadata_Generation`	Generation or passage number.	Identity / design
`Metadata_Temperature`	Culture temperature in degrees Celsius.	Identity / design
`Metadata_Humidity`	Relative humidity during culture.	Identity / design
`Metadata_Atmosphere`	Atmospheric condition (e.g. aerobic, anaerobic).	Identity / design

Category: **Metadata**#
Column label	Description	Type
`Metadata_ExperimentID`	Unique identifier for the experiment.	Identity / design
`Metadata_Project`	Project name or identifier.	Identity / design
`Metadata_Dataset`	Dataset name used to group CLI-emitted measurements.	Identity / design
`Metadata_Protocol`	Protocol name or version followed.	Identity / design
`Metadata_Notes`	Free-text notes or comments.	Identity / design

Category: **Metadata**#
Column label	Description	Type
`Metadata_Title`	Study title.	Identity / design
`Metadata_Description`	Free-text study description.	Identity / design
`Metadata_PrivateUntilDate`	Embargo date until which the study stays private.	Identity / design
`Metadata_Keywords`	Keywords describing the study.	Identity / design
`Metadata_Author`	Study author(s); delimited string when multiple.	Identity / design
`Metadata_License`	Data license (e.g. CC0, CC-BY-4.0).	Identity / design
`Metadata_Funding`	Funding statement or grant reference(s).	Identity / design
`Metadata_Publications`	Associated publication(s) or DOI(s).	Identity / design
`Metadata_Links`	Related links or external resource URLs.	Identity / design
`Metadata_Acknowledgements`	Acknowledgements text.	Identity / design

Category: **Metadata**#
Column label	Description	Type
`Metadata_ImagingDate`	Date the image was acquired.	Identity / design
`Metadata_Instrument`	Imaging instrument or scanner model.	Identity / design
`Metadata_Experimenter`	Person who acquired the image or ran the experiment.	Identity / design
`Metadata_Resolution`	Image resolution (e.g. DPI or pixels per mm).	Identity / design
`Metadata_ExposureTime`	Camera exposure time.	Identity / design