"""Developer tools shared across fungal colony plate workflows.
Lightweight helpers for timing, mask validation, constants, color conversions, error
handling, and HDF storage used by the processing pipeline. Includes a timed execution
decorator, mask validators, colourspace utilities, custom exceptions, and HDF helpers
for persisting plate datasets and measurements.
Advanced users can access GridInferenceMixin and FootprintMixin for creating custom
grid-based operations and morphological footprints.
The ``_io_constants`` submodule is the single source of truth for CLI ↔ GUI
artifact filenames, directory names, JSON contract keys, and path helpers
(re-exported here at package level for convenience).
"""
import importlib as _importlib
from typing import TYPE_CHECKING as _TYPE_CHECKING
from typing import Any as _Any
#: Re-exports whose submodules import heavy third-party libraries -- colour-science
#: (``colourspace``), h5py (``hdf_``), pandas (``_measurement_tables``,
#: ``_metadata_migration``), scipy and scikit-image (``mixin``). Importing any
#: ``phenotypic.sdk_.*`` module runs this ``__init__`` first, so these resolve on first
#: access instead. Defined before the eager imports below, so an import that re-enters
#: this package mid-initialisation still resolves them.
_LAZY_ATTRS: dict[str, str] = {
"colourspace": ".colourspace",
"HDF": ".hdf_",
"PreparedEmbeddedMeasurementTable": "._measurement_tables",
"PreparedImageTables": "._measurement_tables",
"build_measurement_table_descriptor": "._measurement_tables",
"build_metadata_table_descriptor": "._measurement_tables",
"embedded_measurement_columns": "._measurement_tables",
"read_embedded_measurement_column": "._measurement_tables",
"read_embedded_measurement_descriptor": "._measurement_tables",
"replace_embedded_measurement_table": "._measurement_tables",
"replace_image_tables": "._measurement_tables",
"write_embedded_measurement_table": "._measurement_tables",
"write_image_tables": "._measurement_tables",
"write_metadata_table": "._measurement_tables",
"MetadataMigrationAuthority": "._metadata_migration",
"MetadataMigrationReport": "._metadata_migration",
"MetadataMigrationResult": "._metadata_migration",
"MetadataMigrationTarget": "._metadata_migration",
"metadata_migration_authority": "._metadata_migration",
"migrate_metadata_bundle": "._metadata_migration",
"migrate_metadata_file": "._metadata_migration",
"migrate_preflighted_metadata_bundle": "._metadata_migration",
"preflight_metadata_schema": "._metadata_migration",
"rollback_metadata_migration": "._metadata_migration",
"validated_published_metadata_migration_targets": "._metadata_migration",
"FootprintMixin": ".mixin",
"GridInferenceMixin": ".mixin",
"InputLayerMixin": ".mixin",
"LazyWidgetMixin": ".mixin",
"NormControlMixin": ".mixin",
"NormalizedOutputMixin": ".mixin",
}
[docs]
def __getattr__(name: str) -> _Any:
"""Resolve a heavy re-export on first access and cache it on the package."""
module_name = _LAZY_ATTRS.get(name)
if module_name is None:
raise AttributeError(f"module {__name__!r} has no attribute {name!r}")
module = _importlib.import_module(module_name, __name__)
value = module if module_name == f".{name}" else getattr(module, name)
globals()[name] = value
return value
def __dir__() -> list[str]:
# ``globals().get`` rather than a bare ``__all__``: this function sits above the eager
# imports for the same reason ``__getattr__`` does, so it is callable in a window where
# ``__all__`` has not been assigned yet. A bare reference raises ``NameError`` there.
return sorted(set(globals()) | set(globals().get("__all__", ())))
if _TYPE_CHECKING:
from . import colourspace
from ._measurement_tables import (
PreparedEmbeddedMeasurementTable,
PreparedImageTables,
build_measurement_table_descriptor,
build_metadata_table_descriptor,
embedded_measurement_columns,
read_embedded_measurement_column,
read_embedded_measurement_descriptor,
replace_embedded_measurement_table,
replace_image_tables,
write_embedded_measurement_table,
write_image_tables,
write_metadata_table,
)
from ._metadata_migration import (
MetadataMigrationAuthority,
MetadataMigrationReport,
MetadataMigrationResult,
MetadataMigrationTarget,
metadata_migration_authority,
migrate_metadata_bundle,
migrate_metadata_file,
migrate_preflighted_metadata_bundle,
preflight_metadata_schema,
rollback_metadata_migration,
validated_published_metadata_migration_targets,
)
from .hdf_ import HDF
from .mixin import (
FootprintMixin,
GridInferenceMixin,
InputLayerMixin,
LazyWidgetMixin,
NormControlMixin,
NormalizedOutputMixin,
)
from . import ( # noqa: E402
constants_,
exceptions_,
napari_,
slurm,
slurm_,
)
from . import _io_constants # noqa: E402
from ._atomic_io import ( # noqa: E402
CommitGuard,
PARQUET_WRITE_OPTIONS,
atomic_write_bytes,
atomic_write_json,
atomic_write_parquet,
atomic_write_text,
atomic_write_with_writer,
publication_commit,
)
from ._column_ref import ColumnRef, ColumnRefList, ColumnSource # noqa: E402
from ._io_constants import ( # noqa: E402
# Filenames (CLI artifacts)
CURATION_LABELS_PARQUET,
CUSTOM_CATEGORIES_JSON,
DIR_ERRORS,
ERROR_ANALYSIS_CSV,
ERROR_ANALYSIS_HTML,
ERROR_ANALYSIS_PARQUET,
ANALYSIS_MANIFEST_FILENAME,
ANALYSIS_MANIFEST_SCHEMA_VERSION,
ANALYSIS_FULL_PARQUET,
BEST_PARAMS_JSON,
BEST_PIPELINE_JSON,
CHUNK_LOCK,
CHUNK_MANIFEST_JSON,
CHUNK_STATE_JSON,
CONFIG_SUFFIX_COLOR_CHECKER,
CONFIG_SUFFIX_OPERATION,
CONFIG_SUFFIX_PIPELINE,
CONFIG_SUFFIX_TUNING,
CONFIG_SUFFIXES,
DASHBOARD_HTML,
DATASET_AGGREGATED_PARQUET,
DELIVERABLES_METADATA_CSV,
DIR_AGGREGATION_SHARDS,
DIR_CHUNKS,
DIR_DELIVERABLES,
DIR_IMAGE_COMPLETE,
DIR_IMAGE_RECORDS,
DIR_LEGACY_V2,
DIR_LOGS,
DIR_MEASUREMENTS,
DIR_MEASUREMENTS_BY_FEATURE,
DIR_OVERLAYS,
DIR_PLOTS,
DIR_PARETO,
DIR_PHENOTYPIC,
DIR_PHT_TUNE_CACHE,
DIR_PROGRESS,
DIR_QC,
DIR_RECOMPILE,
DIR_RECOMPILE_SHARDS,
DIR_RECOMPILE_STATUS,
DIR_RESULTS,
DIR_SLURM_SCRIPTS,
DIR_SPLITS,
DIR_STAGE2_DONE,
DIR_ZARR,
MIGRATION_REMEDY,
FAILURES_JSONL,
TERMINAL_FAILURES_JSONL,
GENERALIZATION_JSON,
GUI_LAUNCH_OWNER_JSON,
GUI_LOG_FILENAMES,
JOB_METADATA_JSON,
LEGACY_JSON_SUFFIX,
LOCAL_SCHEDULER_EPOCH,
MANIFEST_JSON,
MASTER_MEASUREMENTS_PARQUET,
MEASUREMENTS_CSV,
MEASUREMENTS_PARQUET,
PARAM_IMPORTANCE_JSON,
PARETO_FRONT_PARQUET,
PIPELINE_JSON,
PIPELINE_CONFIG_SUFFIXES,
PROCESSING_EVENTS_LOG,
PROCESSING_REPORT_HTML,
PROCESSING_STATE_JSON,
AGGREGATE_PROOF_VERSION,
ARTIFACT_KIND_FILE,
ARTIFACT_KIND_STORE,
RUN_COMPLETION_JSON,
RUN_LOG_DIRNAME,
RUN_MARKER_JSON,
RUN_PROOF_VERSION,
SLURM_LIFECYCLE_JSON,
SUCCESS_MARKER_VERSION,
QC_DUCKDB,
QC_REVIEW_STATE_JSON,
README_MD,
RECOMPILE_TASK_MANIFEST_JSON,
RESTART_EPOCH_JSON,
REMBI_MANIFEST_YAML,
SENTINEL_RESUBMITTED_MARKER,
SPLIT_ASSIGNMENT_JSON,
STDOUT_LOG,
STUDY_DB,
STUDY_JOURNAL_LOG,
TRIALS_PARQUET,
TUNING_CONFIG_SUFFIXES,
TUNING_SPEC_JSON,
VERIFICATION_CACHE_JSON,
VERIFICATION_CACHE_VERSION,
VERIFIED_PARQUET,
# Namespace classes
ChunkManifestKey,
ChunkStateKey,
DashboardManifestKey,
DashboardManifestSlurmInfoKey,
EnvVar,
JobMetadataKey,
ModulePath,
ProcessingStateKey,
AnalysisArtifactPaths,
# Path helpers
analysis_full_parquet_path,
aggregate_publication_marker_path,
analysis_manifest_path,
best_pipeline_path,
best_params_path,
bytes_fingerprint,
chunk_lock_path,
chunk_manifest_path,
chunk_parquet_filename,
chunk_parquet_path,
chunk_state_path,
chunks_dir,
aggregation_shard_dir,
checkpoint_lock_filename,
checkpoint_lock_path,
dashboard_html_path,
BundleLayout,
dataset_measurements_dir,
dataset_overlays_dir,
dataset_results_dir,
dataset_zarr_dir,
datasets_needing_migration,
overlays_dir,
plots_dir,
default_output_dir_name,
curation_labels_parquet_path,
custom_categories_json_path,
deliverables_dir,
error_analysis_csv_path,
error_analysis_html_path,
error_analysis_parquet_path,
error_category_parquet_path,
errors_dir,
event_log_path,
ensure_typed_json_suffix,
failures_jsonl_path,
file_fingerprint,
generalization_path,
generation_staging_path,
gui_launch_owner_path,
slurm_lifecycle_path,
image_completion_marker_path,
image_record_path,
has_config_suffix,
job_metadata_path,
load_image_from_store,
logs_dir,
manifest_json_path,
master_measurements_parquet_path,
measurements_by_feature_dir,
measurements_csv_path,
measurements_parquet_path,
migration_backup_dir,
migration_backup_path,
migration_lock_path,
migration_receipt_path,
named_analysis_csv_path,
named_analysis_parquet_path,
named_analysis_paths,
metadata_csv_deliverable_path,
terminal_failures_jsonl_path,
matches_any_suffix,
param_importance_path,
pareto_best_pipeline_path,
pareto_dir,
pareto_front_parquet_path,
pareto_importance_path,
phenotypic_cache_dir,
phenotypic_cache_pipeline_json_path,
pipeline_json_path,
pipeline_publication_lock_path,
paths_fingerprint,
processing_report_html_path,
processing_state_path,
progress_dir,
qc_dir,
qc_duckdb_path,
qc_review_state_path,
readme_md_path,
read_run_manifest,
recompile_dir,
recompile_status_dir,
rembi_manifest_path,
resolve_event_log_path,
resolve_execution_mode,
resolve_manifest_json_path,
resolve_pipeline_config_path,
resolve_processing_state_path,
resolve_progress_dir,
resolve_split_assignment_path,
resolve_study_db_path,
resolve_tuning_spec_path,
migrate_legacy_machine_state,
migrate_legacy_qc,
clear_machine_state,
restart_epoch_path,
results_dir,
run_completion_marker_path,
sentinel_resubmitted_path,
shard_parquet_filename,
slurm_scripts_dir,
source_cache_key,
is_zarr_store_name,
store_stem,
source_image_stem,
source_image_suffix,
store_publication_token,
store_revision_identity,
task_status_filename,
task_status_path,
trials_parquet_path,
tune_cache_dir,
tune_cache_run_marker_path,
tune_cache_journal_path,
tune_cache_split_assignment_path,
tune_cache_splits_dir,
tune_cache_study_db_path,
tuning_spec_path,
verification_cache_path,
verified_parquet_path,
validate_analysis_id,
zarr_store_path,
)
from ._image_record import ( # noqa: E402
PROVENANCE_FORWARD,
PROVENANCE_MIGRATED,
RECORD_VERSION,
STAGE_MEASURED,
STAGE_STAGE1,
STAGE_STAGE2,
STAGE_STAGE3,
read_image_record,
record_provenance,
record_rejection,
)
from ._master_io import ( # noqa: E402
master_carries_user_metadata,
user_metadata_headers,
)
from ._pipeline_publication import pipeline_publication_lock # noqa: E402
from ._run_state import ( # noqa: E402
ImageState,
RunDiagnostics,
RunIdentity,
RunState,
aggregate_proof_is_current,
assert_identity_current,
clear_verification_cache,
finalization_input_object,
resolve_run_state,
run_identity,
)
from .funcs_ import is_binary_mask, timed_execution # noqa: E402
from ._metadata_helpers import ( # noqa: E402
canonical_metadata_order,
ensure_metadata_prefix,
external_metadata_preserved_columns,
is_metadata_header,
metadata_category_for_label,
metadata_category_prefixes,
metadata_member_for_header,
metadata_member_for_label,
metadata_only_mask,
metadata_owner_for_header,
metadata_owner_for_label,
normalize_metadata_columns,
order_measurement_columns,
)
from .ngff_ import ( # noqa: E402
EMBEDDED_MEASUREMENT_PARQUET_METADATA_KEYS,
MEASUREMENT_TABLE_RELATIVE_PATH,
METADATA_TABLE_RELATIVE_PATH,
STORE_ROOT_JSON,
STORE_SUFFIX,
PhenotypicAttr,
describe_durability,
durable_writes_enabled,
new_part_path,
promote_store,
read_phenotypic_attributes,
sweep_orphan_parts,
valid_staged_store,
)
from .typing_ import InputLayer, NormOut, ProcessOnlyLayer # noqa: E402
__all__ = [
"aggregate_publication_marker_path",
# Mixins / utilities (existing)
"ColumnRef",
"ColumnRefList",
"ColumnSource",
"FootprintMixin",
"GridInferenceMixin",
"HDF",
"InputLayerMixin",
"LazyWidgetMixin",
"NormControlMixin",
"NormalizedOutputMixin",
"CommitGuard",
"atomic_write_bytes",
"atomic_write_json",
"atomic_write_parquet",
"atomic_write_text",
"atomic_write_with_writer",
"publication_commit",
"PARQUET_WRITE_OPTIONS",
"PreparedEmbeddedMeasurementTable",
"PreparedImageTables",
"build_measurement_table_descriptor",
"build_metadata_table_descriptor",
"embedded_measurement_columns",
"read_embedded_measurement_column",
"read_embedded_measurement_descriptor",
"replace_embedded_measurement_table",
"replace_image_tables",
"write_embedded_measurement_table",
"write_image_tables",
"write_metadata_table",
"canonical_metadata_order",
"colourspace",
"constants_",
"exceptions_",
"ensure_metadata_prefix",
"external_metadata_preserved_columns",
"is_binary_mask",
"is_metadata_header",
"metadata_category_for_label",
"metadata_category_prefixes",
"metadata_member_for_header",
"metadata_member_for_label",
"metadata_only_mask",
"metadata_owner_for_header",
"metadata_owner_for_label",
"normalize_metadata_columns",
"order_measurement_columns",
"MetadataMigrationAuthority",
"MetadataMigrationReport",
"MetadataMigrationResult",
"MetadataMigrationTarget",
"metadata_migration_authority",
"migrate_metadata_bundle",
"migrate_metadata_file",
"migrate_preflighted_metadata_bundle",
"preflight_metadata_schema",
"rollback_metadata_migration",
"validated_published_metadata_migration_targets",
"napari_",
"slurm",
"slurm_",
"timed_execution",
# OME-Zarr per-image store (NGFF 0.5 / Zarr format v3)
"PhenotypicAttr",
"EMBEDDED_MEASUREMENT_PARQUET_METADATA_KEYS",
"MEASUREMENT_TABLE_RELATIVE_PATH",
"METADATA_TABLE_RELATIVE_PATH",
"STORE_ROOT_JSON",
"STORE_SUFFIX",
"describe_durability",
"durable_writes_enabled",
"new_part_path",
"promote_store",
"read_phenotypic_attributes",
"sweep_orphan_parts",
"valid_staged_store",
# Run-state readers (spec §5.2). The four frozen types land in P1
# Task 2, clear_verification_cache in Task 3, the identity readers in
# Task 4 and resolve_run_state in Task 5 -- each exported by the task
# that implements it, so the tree imports cleanly at every commit.
"ImageState",
"RunDiagnostics",
"RunIdentity",
"RunState",
# P6 Task 2: the GUI's `core_readable` needs the aggregate-proof half of
# the question, which was private. Its other half is the CLI's
# `state_requires_success_markers`, so `core_readable` itself cannot live
# here -- INV-LAYER keeps `_cli` out of `sdk_`.
"aggregate_proof_is_current",
"assert_identity_current",
"clear_verification_cache",
"finalization_input_object",
"resolve_run_state",
"run_identity",
# Typing aliases (closed value sets)
"InputLayer",
"NormOut",
"ProcessOnlyLayer",
# I/O constants module (also re-exported below)
"_io_constants",
# Filename constants
"ANALYSIS_FULL_PARQUET",
"ANALYSIS_MANIFEST_FILENAME",
"ANALYSIS_MANIFEST_SCHEMA_VERSION",
"CURATION_LABELS_PARQUET",
"CUSTOM_CATEGORIES_JSON",
"ERROR_ANALYSIS_CSV",
"ERROR_ANALYSIS_HTML",
"ERROR_ANALYSIS_PARQUET",
"BEST_PARAMS_JSON",
"BEST_PIPELINE_JSON",
"CHUNK_LOCK",
"CHUNK_MANIFEST_JSON",
"CHUNK_STATE_JSON",
"CONFIG_SUFFIX_COLOR_CHECKER",
"CONFIG_SUFFIX_OPERATION",
"CONFIG_SUFFIX_PIPELINE",
"CONFIG_SUFFIX_TUNING",
"CONFIG_SUFFIXES",
"DASHBOARD_HTML",
"DATASET_AGGREGATED_PARQUET",
"DELIVERABLES_METADATA_CSV",
"FAILURES_JSONL",
"TERMINAL_FAILURES_JSONL",
"GENERALIZATION_JSON",
"GUI_LAUNCH_OWNER_JSON",
"GUI_LOG_FILENAMES",
"JOB_METADATA_JSON",
"LEGACY_JSON_SUFFIX",
"LOCAL_SCHEDULER_EPOCH",
"MANIFEST_JSON",
"MASTER_MEASUREMENTS_PARQUET",
"MEASUREMENTS_CSV",
"MEASUREMENTS_PARQUET",
"PARAM_IMPORTANCE_JSON",
"PARETO_FRONT_PARQUET",
"PIPELINE_JSON",
"PIPELINE_CONFIG_SUFFIXES",
"PROCESSING_EVENTS_LOG",
"PROCESSING_REPORT_HTML",
"PROCESSING_STATE_JSON",
"AGGREGATE_PROOF_VERSION",
"ARTIFACT_KIND_FILE",
"ARTIFACT_KIND_STORE",
"RUN_COMPLETION_JSON",
"RUN_LOG_DIRNAME",
"RUN_MARKER_JSON",
"RUN_PROOF_VERSION",
"SLURM_LIFECYCLE_JSON",
"SUCCESS_MARKER_VERSION",
"QC_DUCKDB",
"QC_REVIEW_STATE_JSON",
"README_MD",
"RECOMPILE_TASK_MANIFEST_JSON",
"RESTART_EPOCH_JSON",
"REMBI_MANIFEST_YAML",
"SENTINEL_RESUBMITTED_MARKER",
"SPLIT_ASSIGNMENT_JSON",
"STDOUT_LOG",
"STUDY_DB",
"STUDY_JOURNAL_LOG",
"TRIALS_PARQUET",
"TUNING_CONFIG_SUFFIXES",
"TUNING_SPEC_JSON",
"VERIFICATION_CACHE_JSON",
"VERIFICATION_CACHE_VERSION",
"VERIFIED_PARQUET",
# Directory constants
"DIR_AGGREGATION_SHARDS",
"DIR_CHUNKS",
"DIR_DELIVERABLES",
"DIR_ERRORS",
"DIR_IMAGE_COMPLETE",
"DIR_IMAGE_RECORDS",
"DIR_LEGACY_V2",
"DIR_LOGS",
"DIR_MEASUREMENTS",
"DIR_MEASUREMENTS_BY_FEATURE",
"DIR_OVERLAYS",
"DIR_PLOTS",
"DIR_PARETO",
"DIR_PHENOTYPIC",
"DIR_PHT_TUNE_CACHE",
"DIR_PROGRESS",
"DIR_QC",
"DIR_RECOMPILE",
"DIR_RECOMPILE_SHARDS",
"DIR_RECOMPILE_STATUS",
"DIR_RESULTS",
"DIR_SLURM_SCRIPTS",
"DIR_SPLITS",
"DIR_STAGE2_DONE",
"DIR_ZARR",
# Namespace classes for JSON keys + dispatch
"ChunkManifestKey",
"ChunkStateKey",
"DashboardManifestKey",
"DashboardManifestSlurmInfoKey",
"EnvVar",
"JobMetadataKey",
"ModulePath",
"ProcessingStateKey",
"AnalysisArtifactPaths",
# Path helpers
"BundleLayout",
"aggregation_shard_dir",
"analysis_full_parquet_path",
"analysis_manifest_path",
"best_pipeline_path",
"best_params_path",
"bytes_fingerprint",
"chunk_lock_path",
"chunk_manifest_path",
"chunk_parquet_filename",
"chunk_parquet_path",
"chunk_state_path",
"chunks_dir",
"checkpoint_lock_filename",
"checkpoint_lock_path",
"dashboard_html_path",
"dataset_measurements_dir",
"dataset_overlays_dir",
"dataset_results_dir",
"MIGRATION_REMEDY",
"dataset_zarr_dir",
"datasets_needing_migration",
"overlays_dir",
"plots_dir",
"curation_labels_parquet_path",
"custom_categories_json_path",
"default_output_dir_name",
"deliverables_dir",
"error_analysis_csv_path",
"error_analysis_html_path",
"error_analysis_parquet_path",
"error_category_parquet_path",
"errors_dir",
"event_log_path",
"ensure_typed_json_suffix",
"failures_jsonl_path",
"file_fingerprint",
"generalization_path",
"generation_staging_path",
"gui_launch_owner_path",
"slurm_lifecycle_path",
"image_completion_marker_path",
"image_record_path",
"read_image_record",
"record_provenance",
"record_rejection",
"PROVENANCE_FORWARD",
"PROVENANCE_MIGRATED",
"RECORD_VERSION",
"STAGE_MEASURED",
"STAGE_STAGE1",
"STAGE_STAGE2",
"STAGE_STAGE3",
"has_config_suffix",
"job_metadata_path",
"load_image_from_store",
"logs_dir",
"manifest_json_path",
"master_carries_user_metadata",
"user_metadata_headers",
"master_measurements_parquet_path",
"measurements_by_feature_dir",
"measurements_csv_path",
"measurements_parquet_path",
"migration_backup_dir",
"migration_backup_path",
"migration_lock_path",
"migration_receipt_path",
"named_analysis_csv_path",
"named_analysis_parquet_path",
"named_analysis_paths",
"metadata_csv_deliverable_path",
"terminal_failures_jsonl_path",
"matches_any_suffix",
"migrate_legacy_machine_state",
"migrate_legacy_qc",
"clear_machine_state",
"param_importance_path",
"pareto_best_pipeline_path",
"pareto_dir",
"pareto_front_parquet_path",
"pareto_importance_path",
"phenotypic_cache_dir",
"phenotypic_cache_pipeline_json_path",
"pipeline_json_path",
"pipeline_publication_lock",
"pipeline_publication_lock_path",
"paths_fingerprint",
"processing_report_html_path",
"processing_state_path",
"progress_dir",
"qc_dir",
"qc_duckdb_path",
"qc_review_state_path",
"readme_md_path",
"read_run_manifest",
"recompile_dir",
"recompile_status_dir",
"rembi_manifest_path",
"resolve_event_log_path",
"resolve_execution_mode",
"resolve_manifest_json_path",
"resolve_pipeline_config_path",
"resolve_processing_state_path",
"resolve_progress_dir",
"resolve_split_assignment_path",
"resolve_study_db_path",
"resolve_tuning_spec_path",
"restart_epoch_path",
"results_dir",
"run_completion_marker_path",
"sentinel_resubmitted_path",
"shard_parquet_filename",
"slurm_scripts_dir",
"source_cache_key",
"is_zarr_store_name",
"store_stem",
"source_image_stem",
"source_image_suffix",
"store_publication_token",
"store_revision_identity",
"task_status_filename",
"task_status_path",
"trials_parquet_path",
"tune_cache_dir",
"tune_cache_run_marker_path",
"tune_cache_journal_path",
"tune_cache_split_assignment_path",
"tune_cache_splits_dir",
"tune_cache_study_db_path",
"tuning_spec_path",
"verification_cache_path",
"verified_parquet_path",
"validate_analysis_id",
"zarr_store_path",
]
