Tutorials
=========

Guided lessons that teach through doing. Each tutorial builds on the previous,
forming a sequential learning path from loading your first plate image to
detecting filamentous fungi.

Every code cell is runnable against PhenoTypic's bundled sample data.

.. toctree::
   :maxdepth: 1
   :caption: Learning Path

   notebooks/01_your_first_plate_image
   notebooks/02_detecting_colonies
   notebooks/03_enhancing_before_detection
   notebooks/04_building_a_pipeline
   notebooks/05_working_with_grid_plates
   notebooks/06_batch_processing
   notebooks/07_measuring_and_exporting
   notebooks/08_using_prefab_pipelines
   notebooks/09_diagnosing_image_quality
   notebooks/10_detecting_filamentous_fungi