Index

A

abandoned_older_than() (exlab_wizard.controller.session_store.SessionStore method) (exlab_wizard.controller.SessionStore method) ABORTED (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.SessionState attribute) aborted (exlab_wizard.plugins.host.PluginPassResult attribute) ActionSpec (class in exlab_wizard.ui.notifications) active (exlab_wizard.ui.components.filter_chips.ChipState attribute) (exlab_wizard.ui.components.tree.TreeFilters attribute) active_section (exlab_wizard.ui.pages.settings.SettingsState attribute) active_sessions (exlab_wizard.tray.status.StatusSnapshot attribute) (exlab_wizard.tray.StatusSnapshot attribute) active_step (exlab_wizard.ui.pages.wizard_project.ProjectWizardState attribute) (exlab_wizard.ui.pages.wizard_run.RunWizardState attribute) active_tab (exlab_wizard.ui.pages.main.MainPageState attribute) added (exlab_wizard.api.events.DeltaEvent attribute) allow_network (exlab_wizard.config.models.PluginsConfig attribute) allowlist (exlab_wizard.config.models.OperatorsConfig attribute) alt (exlab_wizard.ui.keyboard.KeyCombo attribute) answers_file (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) api_version (exlab_wizard.plugins.base.Plugin attribute) (exlab_wizard.plugins.Plugin attribute) (exlab_wizard.plugins.registry.PluginManifest attribute) AppDependencies (class in exlab_wizard.api) (class in exlab_wizard.api.app) append_log_line() (in module exlab_wizard.cache.log_writer) append_state_transition() (exlab_wizard.cache.ingest_writer.IngestWriter method) applied (exlab_wizard.plugins.host.PluginPassResult attribute) applied_entry_as_json() (in module exlab_wizard.plugins.host) archived (exlab_wizard.ui.components.tree.TreeFilters attribute) assert_transition() (in module exlab_wizard.controller) (in module exlab_wizard.controller.state_machine) at (exlab_wizard.api.events.PhaseEvent attribute)

attach_event_queue() (exlab_wizard.controller.session_store.SessionStore method) (exlab_wizard.controller.SessionStore method) attempts (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) audit() (exlab_wizard.validator.engine.Validator method) audit_at (exlab_wizard.api.events.DeltaEvent attribute) (exlab_wizard.api.events.SnapshotEvent attribute) (exlab_wizard.api.routers.problems.ProblemsResponse attribute) (exlab_wizard.api.routers.problems.RefreshResponse attribute) audit_channel (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) audit_task (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) AuditChannel (class in exlab_wizard.api) (class in exlab_wizard.api.app) AuditScopeAll (class in exlab_wizard.validator.engine) AuditScopeEquipment (class in exlab_wizard.validator.engine) AuditScopeProject (class in exlab_wizard.validator.engine) AUTH (exlab_wizard.sync.TransportErrorKind attribute) (exlab_wizard.sync.transports.TransportErrorKind attribute) author (exlab_wizard.plugins.registry.PluginManifest attribute) autostart (exlab_wizard.tray.main.TrayApp attribute) (exlab_wizard.tray.TrayApp attribute) autostart_default_on (exlab_wizard.ui.pages.welcome.WelcomeCardSpec attribute) autostart_helper (exlab_wizard.ui.pages.welcome.WelcomeCardSpec attribute) autostart_label (exlab_wizard.ui.pages.welcome.WelcomeCardSpec attribute) autostart_toggle (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) AutostartManager (class in exlab_wizard.tray) (class in exlab_wizard.tray.autostart) AutostartRequest (class in exlab_wizard.api.setup) AWAITING_VERIFY (exlab_wizard.sync.nas_client.SyncJobState attribute) (exlab_wizard.sync.queue.SyncJobState attribute) (exlab_wizard.sync.SyncJobState attribute)

B

badges (exlab_wizard.ui.components.tree.TreeNode attribute) bandwidth (exlab_wizard.config.models.RcloneTransport attribute) (exlab_wizard.config.models.RsyncSshTransport attribute) bandwidth_schedule_editor() (in module exlab_wizard.ui.components.bandwidth_schedule_editor) BandwidthConfig (class in exlab_wizard.config.models) BandwidthSchedule (class in exlab_wizard.ui.components.bandwidth_schedule_editor) BandwidthWindow (class in exlab_wizard.config.models) banner_overflow_count() (in module exlab_wizard.ui.notifications) banner_stack() (in module exlab_wizard.ui.components.banner_stack) banner_stack_props() (in module exlab_wizard.ui.components.banner_stack) BannerId (class in exlab_wizard.ui.components.banner_stack) (class in exlab_wizard.ui.notifications) bind_global_shortcuts() (in module exlab_wizard.ui.keyboard) BLOCKED (exlab_wizard.sync.SyncHandleState attribute) blocking_findings (exlab_wizard.sync.nas_client.SyncJobHandle attribute) (exlab_wizard.sync.SyncJobHandle attribute) build_browse_router() (in module exlab_wizard.api.routers.browse) build_config_router() (in module exlab_wizard.api.routers.config) build_error_envelope() (in module exlab_wizard.api.errors)

build_health_router() (in module exlab_wizard.api.health) build_icon() (in module exlab_wizard.tray) (in module exlab_wizard.tray.icon) build_nodes() (in module exlab_wizard.ui.components.tree) build_operations_router() (in module exlab_wizard.api.routers.operations) build_problems_router() (in module exlab_wizard.api.routers.problems) build_root_css() (in module exlab_wizard.ui.theme) build_sessions_router() (in module exlab_wizard.api.routers.sessions) build_setup_router() (in module exlab_wizard.api.setup) build_staging_router() (in module exlab_wizard.api.routers.staging) build_test_registry() (in module exlab_wizard.plugins.host) build_tree() (in module exlab_wizard.ui.components.tree) build_window_url() (in module exlab_wizard.window) (in module exlab_wizard.window.pywebview_app) bullets (exlab_wizard.ui.pages.welcome.WelcomeCardSpec attribute) byte_total (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.orchestrator.StagedRunSummary attribute) (exlab_wizard.orchestrator.staging_query.StagedRunSummary attribute) bytes_freed (exlab_wizard.api.routers.staging.ClearResponse attribute)

C

cache_creation (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) cache_freshness_at_use (exlab_wizard.api.schemas.LimsProjectBlock attribute) cache_ttl_hours (exlab_wizard.config.models.LIMSConfig attribute) CACHE_WRITE (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.SessionState attribute) can_advance() (in module exlab_wizard.ui.pages.wizard_project) (in module exlab_wizard.ui.pages.wizard_run) can_handle() (exlab_wizard.plugins.base.Plugin method) (exlab_wizard.plugins.Plugin method) cancel() (exlab_wizard.controller.creation.CreationController method) (exlab_wizard.controller.CreationController method) cancel_all() (exlab_wizard.tray.NotificationBus method) (exlab_wizard.tray.notifications.NotificationBus method) candidates_for() (exlab_wizard.plugins.registry.PluginRegistry method) central_log_keep (exlab_wizard.config.models.LoggingConfig attribute) central_log_max_mb (exlab_wizard.config.models.LoggingConfig attribute) changed (exlab_wizard.api.events.DeltaEvent attribute) check_illegal_filesystem_character() (in module exlab_wizard.validator.rules) check_malformed_yaml_front_matter() (in module exlab_wizard.validator.rules) check_missing_required_field() (in module exlab_wizard.validator.rules) check_mode_prefix_mismatch() (in module exlab_wizard.validator.rules) check_orphan() (in module exlab_wizard.validator.rules) check_reserved_filesystem_name() (in module exlab_wizard.validator.rules) check_unresolved_placeholder() (in module exlab_wizard.validator.rules) children (exlab_wizard.ui.components.tree.TreeNode attribute) chip_id (exlab_wizard.ui.components.filter_chips.ChipDefinition attribute) chip_state (exlab_wizard.ui.pages.main.MainPageState attribute) chip_state_to_tree_filters() (in module exlab_wizard.ui.pages.main) ChipDefinition (class in exlab_wizard.ui.components.filter_chips) ChipState (class in exlab_wizard.ui.components.filter_chips) class_chip_definitions() (in module exlab_wizard.ui.pages.problems) class_chips (exlab_wizard.ui.pages.problems.ProblemsPageState attribute) CLEANED (exlab_wizard.sync.nas_client.SyncJobState attribute) (exlab_wizard.sync.queue.SyncJobState attribute) (exlab_wizard.sync.SyncJobState attribute) CLEANUP_ELIGIBLE (exlab_wizard.sync.nas_client.SyncJobState attribute) (exlab_wizard.sync.queue.SyncJobState attribute) (exlab_wizard.sync.SyncJobState attribute) cleanup_eligible() (in module exlab_wizard.orchestrator) (in module exlab_wizard.orchestrator.cleanup) cleanup_interlocks_satisfied() (in module exlab_wizard.sync) (in module exlab_wizard.sync.cleanup) clear_banner() (in module exlab_wizard.ui.notifications) clear_field_error() (in module exlab_wizard.ui.notifications) clear_form_errors() (in module exlab_wizard.ui.notifications) clear_run() (in module exlab_wizard.orchestrator) (in module exlab_wizard.orchestrator.cleanup) clear_run_context() (in module exlab_wizard.logging) (in module exlab_wizard.logging.context) ClearResponse (class in exlab_wizard.api.routers.staging) close() (exlab_wizard.api.app.AuditChannel method) (exlab_wizard.api.AuditChannel method) (exlab_wizard.controller.session_store.SessionStore method) (exlab_wizard.controller.SessionStore method) (exlab_wizard.lims.cache.LIMSCache method) (exlab_wizard.lims.client.LIMSClient method) (exlab_wizard.lims.LIMSCache method) (exlab_wizard.lims.LIMSClient method) (exlab_wizard.logging.handlers.EquipmentScopedFileHandler method) (exlab_wizard.sync.nas_client.NASSyncClient method) (exlab_wizard.sync.NASSyncClient method) (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) (exlab_wizard.tray.window_launcher.WindowLauncher method) (exlab_wizard.tray.WindowLauncher method) cmd (exlab_wizard.ui.keyboard.KeyCombo attribute) color_var (exlab_wizard.ui.components.status_bar_segment.SegmentSpec attribute) combo_for_current_os() (in module exlab_wizard.ui.keyboard) completeness_signal (exlab_wizard.config.models.EquipmentConfig attribute) components (exlab_wizard.api.health.HealthResponse attribute) compute_local_manifest() (exlab_wizard.sync.Verifier method) (exlab_wizard.sync.verifier.Verifier method)

compute_phase_rows() (in module exlab_wizard.ui.components.session_progress) compute_setup_state() (in module exlab_wizard.api.setup) Config (class in exlab_wizard.config.models) config (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) (exlab_wizard.validator.engine.Validator property) config_field_decls (exlab_wizard.readme.generator.ReadmeContext attribute) (exlab_wizard.readme.ReadmeContext attribute) config_fields (exlab_wizard.api.schemas.ReadmeFieldsJson attribute) (exlab_wizard.readme.generator.ReadmeContext attribute) (exlab_wizard.readme.ReadmeContext attribute) config_required_field_ids (exlab_wizard.validator.engine.CreationValidationInput attribute), [1] ConfigError ConfigUpdateResponse (class in exlab_wizard.api.routers.config) configure_logging() (in module exlab_wizard.logging) (in module exlab_wizard.logging.manager) configured_local_root (exlab_wizard.api.schemas.EquipmentJson attribute) configured_nas_root (exlab_wizard.api.schemas.EquipmentJson attribute) contact_name (exlab_wizard.lims.LIMSProject attribute) (exlab_wizard.lims.schemas.LIMSProject attribute) ContainerId (class in exlab_wizard.ui.components.banner_stack) (class in exlab_wizard.ui.notifications) content_scan_extensions (exlab_wizard.config.models.ValidatorConfig attribute) content_scan_max_mib (exlab_wizard.config.models.ValidatorConfig attribute) context (exlab_wizard.plugins.logger.PluginLogFrame attribute) (exlab_wizard.plugins.PluginLogFrame attribute) controller (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) core (exlab_wizard.readme.generator.ReadmeContext attribute) (exlab_wizard.readme.ReadmeContext attribute) core_fields (exlab_wizard.api.schemas.ReadmeFieldsJson attribute) CoreFields (class in exlab_wizard.readme) (class in exlab_wizard.readme.generator) create_app() (in module exlab_wizard.api) (in module exlab_wizard.api.app) create_project() (exlab_wizard.controller.creation.CreationController method) (exlab_wizard.controller.CreationController method) create_run() (exlab_wizard.controller.creation.CreationController method) (exlab_wizard.controller.CreationController method) created (exlab_wizard.readme.generator.SystemFields attribute) (exlab_wizard.readme.SystemFields attribute) created_at (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.api.schemas.TestRunsJson attribute) (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] created_by (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.readme.generator.SystemFields attribute) (exlab_wizard.readme.SystemFields attribute) CreationController (class in exlab_wizard.controller) (class in exlab_wizard.controller.creation) CreationJson (class in exlab_wizard.api.schemas) CreationValidationInput (class in exlab_wizard.validator.engine) CreationWriter (class in exlab_wizard.cache.creation_writer) credential_field() (in module exlab_wizard.ui.components.credential_field) credential_props() (in module exlab_wizard.ui.components.credential_field) CredentialState (class in exlab_wizard.ui.components.credential_field) ctrl (exlab_wizard.ui.keyboard.KeyCombo attribute) current (exlab_wizard.api.events.ProgressEvent attribute) current_phase (exlab_wizard.api.routers.sessions.SessionHandleResponse attribute) (exlab_wizard.controller.creation.SessionHandle attribute) (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] (exlab_wizard.controller.SessionHandle attribute) current_state (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.api.schemas.IngestJson attribute) (exlab_wizard.orchestrator.StagedRunSummary attribute) (exlab_wizard.orchestrator.staging_query.StagedRunSummary attribute) custom_fields (exlab_wizard.api.schemas.ReadmeFieldsJson attribute) (exlab_wizard.readme.generator.ReadmeContext attribute) (exlab_wizard.readme.ReadmeContext attribute) CustomField (class in exlab_wizard.readme) (class in exlab_wizard.readme.generator)

D

DANGER (exlab_wizard.ui.components.banner_stack.Severity attribute) (exlab_wizard.ui.notifications.Severity attribute) days (exlab_wizard.config.models.BandwidthWindow attribute) (exlab_wizard.ui.components.bandwidth_schedule_editor.ScheduleWindow attribute) db_path (exlab_wizard.sync.queue.SyncQueue property) (exlab_wizard.sync.SyncQueue property) debug() (exlab_wizard.plugins.HostPluginLogger method) (exlab_wizard.plugins.logger.HostPluginLogger method) (exlab_wizard.plugins.logger.PluginLogger method) (exlab_wizard.plugins.logger.WorkerPluginLogger method) (exlab_wizard.plugins.PluginLogger method) (exlab_wizard.plugins.WorkerPluginLogger method) default (exlab_wizard.config.models.READMEDefaultField attribute) (exlab_wizard.readme.generator.TemplateFieldDecl attribute) (exlab_wizard.readme.TemplateFieldDecl attribute) default_icon_image() (in module exlab_wizard.tray.icon) default_on (exlab_wizard.ui.components.filter_chips.ChipDefinition attribute) default_upload_mbps (exlab_wizard.ui.components.bandwidth_schedule_editor.BandwidthSchedule attribute) defaults (exlab_wizard.config.models.READMEConfig attribute) delete() (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) delete_password() (exlab_wizard.lims.keyring_store.KeyringStore method) (exlab_wizard.lims.KeyringStore method) DeltaEvent (class in exlab_wizard.api.events) describe_changes() (exlab_wizard.plugins.base.Plugin method) (exlab_wizard.plugins.Plugin method)

description (exlab_wizard.lims.LIMSProject attribute) (exlab_wizard.lims.schemas.LIMSProject attribute) (exlab_wizard.plugins.registry.PluginManifest attribute) (exlab_wizard.template.copier_driver.ResolvedTemplate attribute), [1] (exlab_wizard.ui.keyboard.ShortcutBinding attribute) detail (exlab_wizard.plugins.base.FileChange attribute), [1] (exlab_wizard.plugins.FileChange attribute), [1] (exlab_wizard.ui.components.test_connection_panel.TestConnectionResult attribute) detected_at (exlab_wizard.ui.pages.problems.Finding attribute) directory_name (exlab_wizard.ui.components.tree.RunNode attribute) dirty_sections (exlab_wizard.ui.pages.settings.SettingsState attribute) disk_space_pre_flight_message() (in module exlab_wizard.ui.pages.wizard_project) dispatch() (exlab_wizard.ui.keyboard.ShortcutRegistry method) DONE (exlab_wizard.controller.Phase attribute) (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.Phase attribute) (exlab_wizard.controller.state_machine.SessionState attribute) DoneEvent (class in exlab_wizard.api.events) dry_run (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) dst_path (exlab_wizard.template.copier_driver.RenderResult attribute), [1] dst_root (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) dump_config() (in module exlab_wizard.config.loader) duration_ms (exlab_wizard.api.schemas.PluginIsolation attribute)

E

effective_bandwidth_limit_kibps() (in module exlab_wizard.sync) (in module exlab_wizard.sync.bandwidth) elapsed_seconds_since_last_activity (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.orchestrator.StagedRunSummary attribute) (exlab_wizard.orchestrator.staging_query.StagedRunSummary attribute) email (exlab_wizard.config.models.LIMSConfig attribute) (exlab_wizard.lims.client.LIMSClient property) (exlab_wizard.lims.LIMSClient property) (exlab_wizard.lims.LIMSUser attribute) (exlab_wizard.lims.schemas.LIMSUser attribute) emit() (exlab_wizard.logging.handlers.EquipmentScopedFileHandler method) (exlab_wizard.tray.NotificationBus method) (exlab_wizard.tray.notifications.NotificationBus method) empty_state_text() (in module exlab_wizard.ui.pages.problems) enabled (exlab_wizard.api.schemas.OrchestratorBlock attribute) (exlab_wizard.api.setup.AutostartRequest attribute) (exlab_wizard.config.models.NASCleanupConfig attribute) (exlab_wizard.config.models.OrchestratorConfig attribute) (exlab_wizard.config.models.SyncConfig attribute) encode_event() (in module exlab_wizard.api.events) endpoint (exlab_wizard.config.models.LIMSConfig attribute) (exlab_wizard.lims.client.LIMSClient property) (exlab_wizard.lims.LIMSClient property) enqueue() (exlab_wizard.controller.creation.NASSyncProtocol method) (exlab_wizard.controller.creation.NoOpNASSync method) (exlab_wizard.controller.NASSyncProtocol method) (exlab_wizard.controller.NoOpNASSync method) (exlab_wizard.orchestrator.staging_watcher.NASSyncLike method) (exlab_wizard.sync.nas_client.NASSyncClient method) (exlab_wizard.sync.NASSyncClient method) enqueued_at (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) equipment (exlab_wizard.api.routers.browse.TreeResponse attribute) (exlab_wizard.api.schemas.TestRunsJson attribute) (exlab_wizard.api.setup.EquipmentTestRequest attribute) (exlab_wizard.config.models.Config attribute) (exlab_wizard.readme.generator.SystemFields attribute) (exlab_wizard.readme.SystemFields attribute) (exlab_wizard.ui.components.operations_modal.OperationRow attribute) (exlab_wizard.ui.pages.problems.Finding attribute) equipment_id (exlab_wizard.api.routers.operations.OperationEntry attribute) (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.api.schemas.IngestJson attribute) (exlab_wizard.api.setup.EquipmentTestRequest attribute) (exlab_wizard.controller.creation.ProjectCreateRequest attribute) (exlab_wizard.controller.creation.ReadmeContext attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ProjectCreateRequest attribute) (exlab_wizard.controller.ReadmeContext attribute) (exlab_wizard.controller.RunCreateRequest attribute) (exlab_wizard.orchestrator.StagedRunSummary attribute) (exlab_wizard.orchestrator.staging_query.StagedRunSummary attribute) (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) (exlab_wizard.ui.components.tree.EquipmentNode attribute) equipment_probe (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) EquipmentCacheWriter (class in exlab_wizard.cache.equipment) EquipmentConfig (class in exlab_wizard.config.models) EquipmentJson (class in exlab_wizard.api.schemas) EquipmentNode (class in exlab_wizard.api.routers.browse) (class in exlab_wizard.ui.components.tree) EquipmentScopedFileHandler (class in exlab_wizard.logging.handlers) EquipmentTestRequest (class in exlab_wizard.api.setup) error (exlab_wizard.api.events.FailedEvent attribute) (exlab_wizard.api.routers.sessions.SessionHandleResponse attribute) (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] error() (exlab_wizard.plugins.HostPluginLogger method) (exlab_wizard.plugins.logger.HostPluginLogger method) (exlab_wizard.plugins.logger.PluginLogger method) (exlab_wizard.plugins.logger.WorkerPluginLogger method) (exlab_wizard.plugins.PluginLogger method) (exlab_wizard.plugins.WorkerPluginLogger method) error_kind (exlab_wizard.sync.TransportResult attribute) (exlab_wizard.sync.transports.TransportResult attribute) (exlab_wizard.sync.verifier.VerifyResult attribute) (exlab_wizard.sync.VerifyResult attribute) error_response() (in module exlab_wizard.api.errors) evaluate_run() (exlab_wizard.orchestrator.staging_watcher.StagingWatcher method) (exlab_wizard.orchestrator.StagingWatcher method) event_queue (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] excerpt_line() (in module exlab_wizard.ui.components.validation_summary) excerpts (exlab_wizard.ui.components.validation_summary.ValidationSummary attribute) executable_path (exlab_wizard.tray.autostart.AutostartManager property) (exlab_wizard.tray.AutostartManager property) exit_code (exlab_wizard.api.schemas.PluginIsolation attribute) exlab_type (exlab_wizard.template.copier_driver.ResolvedTemplate attribute), [1] exlab_version (exlab_wizard.template.copier_driver.ResolvedTemplate attribute), [1] exlab_wizard.api module exlab_wizard.api.app module exlab_wizard.api.errors module exlab_wizard.api.events module exlab_wizard.api.health module exlab_wizard.api.routers module exlab_wizard.api.routers.browse module exlab_wizard.api.routers.config module exlab_wizard.api.routers.operations module exlab_wizard.api.routers.problems module exlab_wizard.api.routers.sessions module exlab_wizard.api.routers.staging module exlab_wizard.api.schemas module exlab_wizard.api.setup module exlab_wizard.cache module exlab_wizard.cache.creation_writer module exlab_wizard.cache.equipment module exlab_wizard.cache.ingest_writer module exlab_wizard.cache.log_writer module exlab_wizard.config module exlab_wizard.config.loader module exlab_wizard.config.models module exlab_wizard.controller module exlab_wizard.controller.creation module exlab_wizard.controller.session_store module exlab_wizard.controller.state_machine module exlab_wizard.errors module exlab_wizard.lims module exlab_wizard.lims.cache module exlab_wizard.lims.catalogue module exlab_wizard.lims.client module exlab_wizard.lims.keyring_store module

exlab_wizard.lims.schemas module exlab_wizard.logging module exlab_wizard.logging.context module exlab_wizard.logging.format module exlab_wizard.logging.handlers module exlab_wizard.logging.manager module exlab_wizard.orchestrator module exlab_wizard.orchestrator.cleanup module exlab_wizard.orchestrator.staging_query module exlab_wizard.orchestrator.staging_watcher module exlab_wizard.plugins module exlab_wizard.plugins.base module exlab_wizard.plugins.host module exlab_wizard.plugins.logger module exlab_wizard.plugins.registry module exlab_wizard.readme module exlab_wizard.readme.generator module exlab_wizard.sync module exlab_wizard.sync.bandwidth module exlab_wizard.sync.cleanup module exlab_wizard.sync.nas_client module exlab_wizard.sync.pre_sync_gate module exlab_wizard.sync.queue module exlab_wizard.sync.transports module exlab_wizard.sync.transports.rclone module exlab_wizard.sync.transports.rsync_ssh module exlab_wizard.sync.verifier module exlab_wizard.template module exlab_wizard.template.copier_driver module exlab_wizard.tray module exlab_wizard.tray.autostart module exlab_wizard.tray.icon module exlab_wizard.tray.main module exlab_wizard.tray.notifications module exlab_wizard.tray.quit_coordinator module exlab_wizard.tray.server_runner module exlab_wizard.tray.status module exlab_wizard.tray.window_launcher module exlab_wizard.ui module exlab_wizard.ui.components module exlab_wizard.ui.components.bandwidth_schedule_editor module exlab_wizard.ui.components.banner_stack module exlab_wizard.ui.components.credential_field module exlab_wizard.ui.components.filter_chips module exlab_wizard.ui.components.mode_badge module exlab_wizard.ui.components.operations_modal module exlab_wizard.ui.components.override_badge module exlab_wizard.ui.components.session_progress module exlab_wizard.ui.components.status_bar_segment module exlab_wizard.ui.components.sync_status_icon module exlab_wizard.ui.components.test_connection_panel module exlab_wizard.ui.components.test_run_badge module exlab_wizard.ui.components.tree module exlab_wizard.ui.components.validation_summary module exlab_wizard.ui.design module exlab_wizard.ui.keyboard module exlab_wizard.ui.notifications module exlab_wizard.ui.pages module exlab_wizard.ui.pages.main module exlab_wizard.ui.pages.problems module exlab_wizard.ui.pages.settings module exlab_wizard.ui.pages.staging module exlab_wizard.ui.pages.welcome module exlab_wizard.ui.pages.wizard_project module exlab_wizard.ui.pages.wizard_run module exlab_wizard.ui.theme module exlab_wizard.validator module exlab_wizard.validator.engine module exlab_wizard.validator.findings module exlab_wizard.validator.rules module exlab_wizard.window module exlab_wizard.window.main module exlab_wizard.window.pywebview_app module ExLabError expires_at (exlab_wizard.api.routers.problems.OverrideRequest attribute) (exlab_wizard.api.routers.problems.OverrideResponse attribute) (exlab_wizard.api.schemas.OverrideEntry attribute) extra (exlab_wizard.sync.verifier.VerifyResult attribute) (exlab_wizard.sync.VerifyResult attribute) extra_fields (exlab_wizard.controller.creation.ReadmeContext attribute) (exlab_wizard.controller.ReadmeContext attribute) extra_readme_fields (exlab_wizard.template.copier_driver.ResolvedTemplate attribute), [1] extract_or_create_trace_id() (in module exlab_wizard.api.errors)

F

FAILED (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.SessionState attribute) (exlab_wizard.sync.nas_client.SyncJobState attribute) (exlab_wizard.sync.queue.SyncJobState attribute) (exlab_wizard.sync.SyncJobState attribute) FailedEvent (class in exlab_wizard.api.events) fetched_at (exlab_wizard.lims.LIMSProject attribute) (exlab_wizard.lims.schemas.LIMSProject attribute) fields (exlab_wizard.api.events.InputRequiredEvent attribute) (exlab_wizard.plugins.host.InputRequiredPayload attribute) file_contents (exlab_wizard.validator.engine.CreationValidationInput attribute), [1] file_count (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.orchestrator.StagedRunSummary attribute) (exlab_wizard.orchestrator.staging_query.StagedRunSummary attribute) file_names (exlab_wizard.validator.engine.CreationValidationInput attribute), [1] FileChange (class in exlab_wizard.plugins) (class in exlab_wizard.plugins.base) files_affected (exlab_wizard.api.schemas.PluginApplied attribute) files_freed (exlab_wizard.api.routers.staging.ClearResponse attribute) files_written (exlab_wizard.template.copier_driver.RenderResult attribute), [1] filter_chips() (in module exlab_wizard.ui.components.filter_chips) filter_findings() (in module exlab_wizard.ui.pages.problems) filter_project() (in module exlab_wizard.ui.components.tree) filter_run() (in module exlab_wizard.ui.components.tree) find_overlaps() (in module exlab_wizard.ui.components.bandwidth_schedule_editor) Finding (class in exlab_wizard.ui.pages.problems) (class in exlab_wizard.validator.findings)

finding_count (exlab_wizard.api.routers.problems.RefreshResponse attribute) finding_id (exlab_wizard.ui.pages.problems.Finding attribute) FindingExcerpt (class in exlab_wizard.ui.components.validation_summary) FindingResponse (class in exlab_wizard.api.routers.problems) findings (exlab_wizard.api.events.SnapshotEvent attribute) (exlab_wizard.api.routers.problems.ProblemsResponse attribute) first_incomplete_section() (in module exlab_wizard.ui.pages.settings) first_seen_at (exlab_wizard.api.schemas.EquipmentJson attribute) flush_pending() (exlab_wizard.tray.NotificationBus method) (exlab_wizard.tray.notifications.NotificationBus method) FOCUS_TREE_SEARCH (exlab_wizard.ui.keyboard.Shortcut attribute) force_verify() (exlab_wizard.sync.nas_client.NASSyncClient method) (exlab_wizard.sync.NASSyncClient method) ForceSyncResponse (class in exlab_wizard.api.routers.staging) format() (exlab_wizard.logging.format.StructuredTagFormatter method) format_bytes() (in module exlab_wizard.ui.pages.staging) format_elapsed() (in module exlab_wizard.ui.pages.staging) format_log_line() (in module exlab_wizard.cache.log_writer) format_manifest() (in module exlab_wizard.sync.verifier) format_status() (in module exlab_wizard.tray) (in module exlab_wizard.tray.status) fraction (exlab_wizard.ui.components.session_progress.PhaseRow attribute) free_disk_bytes (exlab_wizard.ui.pages.wizard_project.ProjectWizardState attribute) freed_bytes_and_count() (in module exlab_wizard.orchestrator.cleanup) from_ (exlab_wizard.config.models.BandwidthWindow attribute) from_config() (exlab_wizard.validator.engine.Validator class method) from_dict() (exlab_wizard.validator.findings.Finding class method) from_time (exlab_wizard.ui.components.bandwidth_schedule_editor.ScheduleWindow attribute)

G

gc_loop() (exlab_wizard.controller.session_store.SessionStore method) (exlab_wizard.controller.SessionStore method) generate() (exlab_wizard.controller.creation.NoOpReadmeGenerator method) (exlab_wizard.controller.creation.ReadmeGeneratorProtocol method) (exlab_wizard.controller.NoOpReadmeGenerator method) (exlab_wizard.controller.ReadmeGeneratorProtocol method) (exlab_wizard.readme.generator.ReadmeGenerator method) (exlab_wizard.readme.ReadmeGenerator method) generated_at (exlab_wizard.api.schemas.ReadmeFieldsJson attribute) get() (exlab_wizard.controller.session_store.SessionStore method) (exlab_wizard.controller.SessionStore method) (exlab_wizard.plugins.registry.PluginRegistry method) get_binding() (in module exlab_wizard.ui.keyboard) get_by_id() (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) get_by_run_path() (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method)

get_field_error() (in module exlab_wizard.ui.notifications) get_form_error() (in module exlab_wizard.ui.notifications) get_logger() (in module exlab_wizard.logging) (in module exlab_wizard.logging.manager) get_me() (exlab_wizard.lims.client.LIMSClient method) (exlab_wizard.lims.LIMSClient method) get_password() (exlab_wizard.lims.keyring_store.KeyringStore method) (exlab_wizard.lims.KeyringStore method) get_project() (exlab_wizard.lims.cache.LIMSCache method) (exlab_wizard.lims.client.LIMSClient method) (exlab_wizard.lims.LIMSCache method) (exlab_wizard.lims.LIMSClient method) get_record() (exlab_wizard.plugins.host.PluginRegistryProtocol method) get_run_context() (in module exlab_wizard.logging) (in module exlab_wizard.logging.context) GLOBAL (exlab_wizard.ui.components.banner_stack.ContainerId attribute) (exlab_wizard.ui.notifications.ContainerId attribute)

H

handlers (exlab_wizard.ui.keyboard.ShortcutRegistry attribute) HandleState (in module exlab_wizard.sync) hard_count (exlab_wizard.ui.components.validation_summary.ValidationSummary attribute) has_creation_json (exlab_wizard.api.routers.browse.ProjectNode attribute) (exlab_wizard.api.routers.browse.RunNode attribute) has_recent_revocation() (in module exlab_wizard.sync.cleanup) HASH_MISMATCH (exlab_wizard.sync.TransportErrorKind attribute) (exlab_wizard.sync.transports.TransportErrorKind attribute) hashsum() (exlab_wizard.sync.transports.rclone.RcloneTransport method) (exlab_wizard.sync.transports.rsync_ssh.RsyncSshTransport method) header_line() (in module exlab_wizard.ui.components.validation_summary) headline (exlab_wizard.ui.components.test_connection_panel.TestConnectionResult attribute) (exlab_wizard.ui.pages.welcome.WelcomeCardSpec attribute)

health_check() (exlab_wizard.lims.client.LIMSClient method) (exlab_wizard.lims.LIMSClient method) HealthResponse (class in exlab_wizard.api.health) HealthStatus (class in exlab_wizard.lims) (class in exlab_wizard.lims.schemas) heartbeat() (exlab_wizard.controller.session_store.SessionStore method) (exlab_wizard.controller.SessionStore method) hint (exlab_wizard.config.models.READMEDefaultField attribute) (exlab_wizard.readme.generator.TemplateFieldDecl attribute) (exlab_wizard.readme.TemplateFieldDecl attribute) history (exlab_wizard.api.schemas.IngestJson attribute) host (exlab_wizard.api.schemas.OrchestratorBlock attribute) HostPluginLogger (class in exlab_wizard.plugins) (class in exlab_wizard.plugins.logger)

I

icon (exlab_wizard.tray.main.TrayApp attribute) (exlab_wizard.tray.TrayApp attribute) id (exlab_wizard.api.routers.browse.EquipmentNode attribute) (exlab_wizard.api.routers.operations.OperationEntry attribute) (exlab_wizard.api.routers.problems.OverrideResponse attribute) (exlab_wizard.api.schemas.EquipmentJson attribute) (exlab_wizard.api.schemas.OverrideEntry attribute) (exlab_wizard.api.schemas.TombstoneEntry attribute) (exlab_wizard.config.models.EquipmentConfig attribute) (exlab_wizard.config.models.READMEDefaultField attribute) (exlab_wizard.readme.generator.TemplateFieldDecl attribute) (exlab_wizard.readme.TemplateFieldDecl attribute) (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) incomplete_sections (exlab_wizard.ui.pages.settings.SettingsState attribute) INFO (exlab_wizard.ui.components.banner_stack.Severity attribute) (exlab_wizard.ui.notifications.Severity attribute) info() (exlab_wizard.plugins.HostPluginLogger method) (exlab_wizard.plugins.logger.HostPluginLogger method) (exlab_wizard.plugins.logger.PluginLogger method) (exlab_wizard.plugins.logger.WorkerPluginLogger method) (exlab_wizard.plugins.PluginLogger method) (exlab_wizard.plugins.WorkerPluginLogger method) ingest_writer (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) IngestJson (class in exlab_wizard.api.schemas) IngestWriter (class in exlab_wizard.cache.ingest_writer) init() (exlab_wizard.lims.cache.LIMSCache method) (exlab_wizard.lims.LIMSCache method) (exlab_wizard.sync.nas_client.NASSyncClient method) (exlab_wizard.sync.NASSyncClient method) (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) initial_state() (in module exlab_wizard.ui.components.filter_chips) INPUT_REQUIRED (exlab_wizard.controller.Phase attribute) (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.Phase attribute) (exlab_wizard.controller.state_machine.SessionState attribute)

input_required_count (exlab_wizard.tray.status.StatusSnapshot attribute) (exlab_wizard.tray.StatusSnapshot attribute) InputRequiredEvent (class in exlab_wizard.api.events) InputRequiredPayload (class in exlab_wizard.plugins.host) insert() (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) is_active (exlab_wizard.ui.components.session_progress.PhaseRow attribute) is_active() (in module exlab_wizard.ui.components.filter_chips) is_alive (exlab_wizard.tray.window_launcher.WindowLauncher property) (exlab_wizard.tray.WindowLauncher property) is_creation_blocked() (in module exlab_wizard.api.setup) is_debug_enabled() (in module exlab_wizard.window) (in module exlab_wizard.window.pywebview_app) is_done (exlab_wizard.ui.components.session_progress.PhaseRow attribute) is_eligible() (in module exlab_wizard.sync) (in module exlab_wizard.sync.pre_sync_gate) is_fresh() (exlab_wizard.lims.cache.LIMSCache method) (exlab_wizard.lims.LIMSCache method) is_keyring_available() (exlab_wizard.lims.keyring_store.KeyringStore method) (exlab_wizard.lims.KeyringStore method) is_macos() (in module exlab_wizard.ui.keyboard) is_pid_alive() (in module exlab_wizard.window) is_registered() (exlab_wizard.tray.autostart.AutostartManager method) (exlab_wizard.tray.AutostartManager method) is_running (exlab_wizard.tray.server_runner.ServerRunner property) (exlab_wizard.tray.ServerRunner property) is_terminal() (exlab_wizard.controller.Session method) (exlab_wizard.controller.session_store.Session method) (exlab_wizard.sync.queue.SyncQueue static method) (exlab_wizard.sync.SyncQueue static method) is_window_active() (in module exlab_wizard.sync.bandwidth) isolation (exlab_wizard.api.schemas.PluginApplied attribute) (exlab_wizard.plugins.registry.PluginManifest attribute)

J

job_id (exlab_wizard.api.routers.staging.ForceSyncResponse attribute) (exlab_wizard.sync.nas_client.SyncJobHandle attribute) (exlab_wizard.sync.SyncJobHandle attribute)

K

key (exlab_wizard.ui.keyboard.KeyCombo attribute) KeyCombo (class in exlab_wizard.ui.keyboard) keyring_password_present (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) KeyringStore (class in exlab_wizard.lims) (class in exlab_wizard.lims.keyring_store) KeyringUnavailableError kind (exlab_wizard.api.routers.browse.RunNode attribute) (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] (exlab_wizard.plugins.base.FileChange attribute), [1] (exlab_wizard.plugins.FileChange attribute), [1] (exlab_wizard.ui.components.tree.TreeNode attribute) (exlab_wizard.validator.engine.AuditScopeAll attribute) (exlab_wizard.validator.engine.AuditScopeEquipment attribute) (exlab_wizard.validator.engine.AuditScopeProject attribute)

L

label (exlab_wizard.api.routers.browse.EquipmentNode attribute) (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.schemas.EquipmentJson attribute) (exlab_wizard.api.schemas.OrchestratorBlock attribute) (exlab_wizard.config.models.EquipmentConfig attribute) (exlab_wizard.config.models.OrchestratorConfig attribute) (exlab_wizard.config.models.READMEDefaultField attribute) (exlab_wizard.controller.creation.ProjectCreateRequest attribute) (exlab_wizard.controller.creation.ReadmeContext attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ProjectCreateRequest attribute) (exlab_wizard.controller.ReadmeContext attribute) (exlab_wizard.controller.RunCreateRequest attribute) (exlab_wizard.readme.CoreFields attribute) (exlab_wizard.readme.CustomField attribute) (exlab_wizard.readme.generator.CoreFields attribute) (exlab_wizard.readme.generator.CustomField attribute) (exlab_wizard.readme.generator.TemplateFieldDecl attribute) (exlab_wizard.readme.TemplateFieldDecl attribute) (exlab_wizard.ui.components.filter_chips.ChipDefinition attribute) (exlab_wizard.ui.components.session_progress.PhaseRow attribute) (exlab_wizard.ui.components.status_bar_segment.SegmentSpec attribute) (exlab_wizard.ui.components.tree.RunNode attribute) (exlab_wizard.ui.components.tree.TreeNode attribute) (exlab_wizard.ui.notifications.ActionSpec attribute) last_activity_at (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.orchestrator.StagedRunSummary attribute) (exlab_wizard.orchestrator.staging_query.StagedRunSummary attribute) last_attempt_at (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) last_audit_at (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) last_error (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) last_heartbeat (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] last_modified_at (exlab_wizard.api.schemas.EquipmentJson attribute) latency_ms (exlab_wizard.api.setup.ProbeResult attribute) (exlab_wizard.lims.HealthStatus attribute) (exlab_wizard.lims.schemas.HealthStatus attribute) level (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.config.models.LoggingConfig attribute) (exlab_wizard.plugins.logger.PluginLogFrame attribute) (exlab_wizard.plugins.PluginLogFrame attribute) (exlab_wizard.readme.generator.ReadmeContext attribute) (exlab_wizard.readme.ReadmeContext attribute) lims (exlab_wizard.api.setup.LIMSTestRequest attribute) (exlab_wizard.config.models.Config attribute) lims_client (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) lims_endpoint (exlab_wizard.lims.catalogue.OfflineCatalogue attribute) (exlab_wizard.lims.OfflineCatalogue attribute)

lims_probe (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) lims_project (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.controller.creation.ProjectCreateRequest attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ProjectCreateRequest attribute) (exlab_wizard.controller.RunCreateRequest attribute) lims_reachable (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) lims_reason (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) LIMS_UNREACHABLE (exlab_wizard.ui.components.banner_stack.BannerId attribute) (exlab_wizard.ui.notifications.BannerId attribute) LIMSCache (class in exlab_wizard.lims) (class in exlab_wizard.lims.cache) LIMSClient (class in exlab_wizard.lims) (class in exlab_wizard.lims.client) LIMSConfig (class in exlab_wizard.config.models) LIMSProject (class in exlab_wizard.lims) (class in exlab_wizard.lims.schemas) LimsProjectBlock (class in exlab_wizard.api.schemas) LIMSTestRequest (class in exlab_wizard.api.setup) LIMSUser (class in exlab_wizard.lims) (class in exlab_wizard.lims.schemas) list_active() (in module exlab_wizard.ui.components.filter_chips) list_active_banners() (in module exlab_wizard.ui.notifications) list_all() (exlab_wizard.plugins.registry.PluginRegistry method) (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) list_bindings() (in module exlab_wizard.ui.keyboard) list_in_state() (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) list_projects() (exlab_wizard.lims.cache.LIMSCache method) (exlab_wizard.lims.client.LIMSClient method) (exlab_wizard.lims.LIMSCache method) (exlab_wizard.lims.LIMSClient method) list_staged_runs() (in module exlab_wizard.orchestrator) (in module exlab_wizard.orchestrator.staging_query) load_config() (in module exlab_wizard.config.loader) load_config_from_text() (in module exlab_wizard.config.loader) loaded (exlab_wizard.plugins.registry.RegistryReport attribute) local (exlab_wizard.api.schemas.PathsBlock attribute) LOCAL_FILE_VANISHED (exlab_wizard.sync.TransportErrorKind attribute) (exlab_wizard.sync.transports.TransportErrorKind attribute) local_root (exlab_wizard.config.models.EquipmentConfig attribute) (exlab_wizard.config.models.PathsConfig attribute) lock_path_for() (in module exlab_wizard.cache) log (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) logging (exlab_wizard.config.models.Config attribute) LoggingConfig (class in exlab_wizard.config.models) login() (exlab_wizard.lims.client.LIMSClient method) (exlab_wizard.lims.LIMSClient method)

M

macos (exlab_wizard.ui.keyboard.ShortcutBinding attribute) main() (in module exlab_wizard.tray.main) (in module exlab_wizard.window.main) MainPageState (class in exlab_wizard.ui.pages.main) manifest (exlab_wizard.plugins.registry.PluginRecord attribute) (exlab_wizard.sync.verifier.VerifyResult attribute) (exlab_wizard.sync.VerifyResult attribute) manifest_filename (exlab_wizard.config.models.EquipmentConfig attribute) matched_token (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.ui.components.validation_summary.FindingExcerpt attribute) (exlab_wizard.ui.pages.problems.Finding attribute) (exlab_wizard.validator.findings.Finding attribute) matches() (exlab_wizard.ui.keyboard.KeyCombo method) matching_files (exlab_wizard.plugins.registry.PluginPlan attribute) mbps_to_kibps() (in module exlab_wizard.sync.bandwidth) memory_mb (exlab_wizard.plugins.host.PluginRecord attribute), [1] message (exlab_wizard.api.events.WarningEvent attribute) (exlab_wizard.plugins.logger.PluginLogFrame attribute) (exlab_wizard.plugins.PluginLogFrame attribute) metadata (exlab_wizard.lims.LIMSProject attribute) (exlab_wizard.lims.schemas.LIMSProject attribute) min_age_hours (exlab_wizard.config.models.NASCleanupConfig attribute) min_verify_passes (exlab_wizard.config.models.NASCleanupConfig attribute) mismatched (exlab_wizard.sync.verifier.VerifyResult attribute) (exlab_wizard.sync.VerifyResult attribute) missing (exlab_wizard.api.routers.config.ConfigUpdateResponse attribute) (exlab_wizard.api.setup.SetupStatusResponse attribute) (exlab_wizard.sync.verifier.VerifyResult attribute) (exlab_wizard.sync.VerifyResult attribute) mode (exlab_wizard.config.models.OrchestratorStagingCleanup attribute) (exlab_wizard.ui.components.bandwidth_schedule_editor.BandwidthSchedule attribute) mode_badge() (in module exlab_wizard.ui.components.mode_badge) mode_badge_props() (in module exlab_wizard.ui.components.mode_badge) model_config (exlab_wizard.api.health.HealthResponse attribute) (exlab_wizard.api.routers.browse.EquipmentNode attribute) (exlab_wizard.api.routers.browse.ProjectNode attribute) (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.routers.browse.RunNode attribute) (exlab_wizard.api.routers.browse.TreeResponse attribute) (exlab_wizard.api.routers.config.ConfigUpdateResponse attribute) (exlab_wizard.api.routers.operations.OperationEntry attribute) (exlab_wizard.api.routers.operations.OperationsResponse attribute) (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.api.routers.problems.OverrideRequest attribute) (exlab_wizard.api.routers.problems.OverrideResponse attribute) (exlab_wizard.api.routers.problems.ProblemsResponse attribute) (exlab_wizard.api.routers.problems.RefreshResponse attribute) (exlab_wizard.api.routers.problems.RevokeRequest attribute) (exlab_wizard.api.routers.sessions.SessionHandleResponse attribute) (exlab_wizard.api.routers.staging.ClearResponse attribute) (exlab_wizard.api.routers.staging.ForceSyncResponse attribute) (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.api.routers.staging.StagingListResponse attribute) (exlab_wizard.api.setup.AutostartRequest attribute) (exlab_wizard.api.setup.EquipmentTestRequest attribute) (exlab_wizard.api.setup.LIMSTestRequest attribute) (exlab_wizard.api.setup.ProbeResult attribute) (exlab_wizard.api.setup.SetupStatusResponse attribute) (exlab_wizard.config.models.BandwidthConfig attribute) (exlab_wizard.config.models.BandwidthWindow attribute) (exlab_wizard.config.models.Config attribute) (exlab_wizard.config.models.EquipmentConfig attribute) (exlab_wizard.config.models.LIMSConfig attribute) (exlab_wizard.config.models.LoggingConfig attribute) (exlab_wizard.config.models.NASCleanupConfig attribute) (exlab_wizard.config.models.OperatorsConfig attribute) (exlab_wizard.config.models.OrchestratorConfig attribute) (exlab_wizard.config.models.OrchestratorStagingCleanup attribute) (exlab_wizard.config.models.OrchestratorStagingTransport attribute) (exlab_wizard.config.models.PathsConfig attribute) (exlab_wizard.config.models.PluginsConfig attribute) (exlab_wizard.config.models.RcloneTransport attribute) (exlab_wizard.config.models.READMEConfig attribute) (exlab_wizard.config.models.READMEDefaultField attribute) (exlab_wizard.config.models.RsyncSshTransport attribute) (exlab_wizard.config.models.SyncConfig attribute) (exlab_wizard.config.models.ValidatorConfig attribute) module exlab_wizard.api exlab_wizard.api.app exlab_wizard.api.errors exlab_wizard.api.events exlab_wizard.api.health exlab_wizard.api.routers exlab_wizard.api.routers.browse exlab_wizard.api.routers.config exlab_wizard.api.routers.operations exlab_wizard.api.routers.problems exlab_wizard.api.routers.sessions exlab_wizard.api.routers.staging exlab_wizard.api.schemas exlab_wizard.api.setup exlab_wizard.cache exlab_wizard.cache.creation_writer exlab_wizard.cache.equipment exlab_wizard.cache.ingest_writer exlab_wizard.cache.log_writer exlab_wizard.config exlab_wizard.config.loader exlab_wizard.config.models exlab_wizard.controller exlab_wizard.controller.creation exlab_wizard.controller.session_store exlab_wizard.controller.state_machine exlab_wizard.errors exlab_wizard.lims exlab_wizard.lims.cache exlab_wizard.lims.catalogue exlab_wizard.lims.client exlab_wizard.lims.keyring_store exlab_wizard.lims.schemas exlab_wizard.logging exlab_wizard.logging.context exlab_wizard.logging.format exlab_wizard.logging.handlers exlab_wizard.logging.manager exlab_wizard.orchestrator exlab_wizard.orchestrator.cleanup exlab_wizard.orchestrator.staging_query exlab_wizard.orchestrator.staging_watcher exlab_wizard.plugins exlab_wizard.plugins.base exlab_wizard.plugins.host exlab_wizard.plugins.logger exlab_wizard.plugins.registry exlab_wizard.readme exlab_wizard.readme.generator exlab_wizard.sync exlab_wizard.sync.bandwidth exlab_wizard.sync.cleanup exlab_wizard.sync.nas_client exlab_wizard.sync.pre_sync_gate exlab_wizard.sync.queue exlab_wizard.sync.transports exlab_wizard.sync.transports.rclone exlab_wizard.sync.transports.rsync_ssh exlab_wizard.sync.verifier exlab_wizard.template exlab_wizard.template.copier_driver exlab_wizard.tray exlab_wizard.tray.autostart exlab_wizard.tray.icon exlab_wizard.tray.main exlab_wizard.tray.notifications exlab_wizard.tray.quit_coordinator exlab_wizard.tray.server_runner exlab_wizard.tray.status exlab_wizard.tray.window_launcher exlab_wizard.ui exlab_wizard.ui.components exlab_wizard.ui.components.bandwidth_schedule_editor exlab_wizard.ui.components.banner_stack exlab_wizard.ui.components.credential_field exlab_wizard.ui.components.filter_chips exlab_wizard.ui.components.mode_badge exlab_wizard.ui.components.operations_modal exlab_wizard.ui.components.override_badge exlab_wizard.ui.components.session_progress exlab_wizard.ui.components.status_bar_segment exlab_wizard.ui.components.sync_status_icon exlab_wizard.ui.components.test_connection_panel exlab_wizard.ui.components.test_run_badge exlab_wizard.ui.components.tree exlab_wizard.ui.components.validation_summary exlab_wizard.ui.design exlab_wizard.ui.keyboard exlab_wizard.ui.notifications exlab_wizard.ui.pages exlab_wizard.ui.pages.main exlab_wizard.ui.pages.problems exlab_wizard.ui.pages.settings exlab_wizard.ui.pages.staging exlab_wizard.ui.pages.welcome exlab_wizard.ui.pages.wizard_project exlab_wizard.ui.pages.wizard_run exlab_wizard.ui.theme exlab_wizard.validator exlab_wizard.validator.engine exlab_wizard.validator.findings exlab_wizard.validator.rules exlab_wizard.window exlab_wizard.window.main exlab_wizard.window.pywebview_app

module_name (exlab_wizard.plugins.host.PluginRecord attribute), [1] mount_point (exlab_wizard.config.models.OrchestratorStagingTransport attribute)

N

name (exlab_wizard.api.routers.browse.RunNode attribute) (exlab_wizard.api.schemas.TemplateBlock attribute) (exlab_wizard.lims.LIMSProject attribute) (exlab_wizard.lims.schemas.LIMSProject attribute) (exlab_wizard.plugins.base.Plugin attribute) (exlab_wizard.plugins.host.PluginRecord attribute), [1] (exlab_wizard.plugins.Plugin attribute) (exlab_wizard.plugins.registry.PluginManifest attribute) (exlab_wizard.template.copier_driver.ResolvedTemplate attribute), [1] (exlab_wizard.ui.components.tree.ProjectNode attribute) name_at_creation (exlab_wizard.api.schemas.LimsProjectBlock attribute) nas (exlab_wizard.api.schemas.PathsBlock attribute) nas_cleanup (exlab_wizard.config.models.Config attribute) nas_path (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) nas_root (exlab_wizard.config.models.EquipmentConfig attribute) nas_sync (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) nas_sync_snapshot (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) NAS_UNREACHABLE (exlab_wizard.ui.components.banner_stack.BannerId attribute) (exlab_wizard.ui.notifications.BannerId attribute) NASCleanupConfig (class in exlab_wizard.config.models) NASSyncClient (class in exlab_wizard.sync) (class in exlab_wizard.sync.nas_client) NASSyncLike (class in exlab_wizard.orchestrator.staging_watcher) NASSyncProtocol (class in exlab_wizard.controller) (class in exlab_wizard.controller.creation) near_limit() (in module exlab_wizard.ui.pages.problems) NETWORK (exlab_wizard.sync.TransportErrorKind attribute) (exlab_wizard.sync.transports.TransportErrorKind attribute)

NEW_PROJECT (exlab_wizard.ui.keyboard.Shortcut attribute) NEW_RUN (exlab_wizard.ui.keyboard.Shortcut attribute) NEW_TEST_RUN (exlab_wizard.ui.keyboard.Shortcut attribute) next_action (exlab_wizard.api.routers.config.ConfigUpdateResponse attribute) (exlab_wizard.api.routers.sessions.SessionHandleResponse attribute) (exlab_wizard.api.setup.SetupStatusResponse attribute) (exlab_wizard.controller.creation.SessionHandle attribute) (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] (exlab_wizard.controller.SessionHandle attribute) next_attempt_at (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) node_id (exlab_wizard.ui.components.tree.TreeNode attribute) NoOpNASSync (class in exlab_wizard.controller) (class in exlab_wizard.controller.creation) NoOpReadmeGenerator (class in exlab_wizard.controller) (class in exlab_wizard.controller.creation) notification_bus (exlab_wizard.tray.main.TrayApp attribute) (exlab_wizard.tray.TrayApp attribute) NotificationBus (class in exlab_wizard.tray) (class in exlab_wizard.tray.notifications) notify() (in module exlab_wizard.tray) (in module exlab_wizard.tray.notifications) notify_error() (in module exlab_wizard.ui.notifications) notify_field_error() (in module exlab_wizard.ui.notifications) notify_form_error() (in module exlab_wizard.ui.notifications) notify_info() (in module exlab_wizard.ui.notifications) notify_success() (in module exlab_wizard.ui.notifications) notify_warning() (in module exlab_wizard.ui.notifications)

O

objective (exlab_wizard.controller.creation.ProjectCreateRequest attribute) (exlab_wizard.controller.creation.ReadmeContext attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ProjectCreateRequest attribute) (exlab_wizard.controller.ReadmeContext attribute) (exlab_wizard.controller.RunCreateRequest attribute) (exlab_wizard.readme.CoreFields attribute) (exlab_wizard.readme.generator.CoreFields attribute) offending_kind (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.validator.findings.Finding attribute) offending_path (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.validator.findings.Finding attribute) offline_catalogue_path (exlab_wizard.config.models.LIMSConfig attribute) OfflineCatalogue (class in exlab_wizard.lims) (class in exlab_wizard.lims.catalogue) ok (exlab_wizard.api.setup.ProbeResult attribute) (exlab_wizard.lims.HealthStatus attribute) (exlab_wizard.lims.schemas.HealthStatus attribute) (exlab_wizard.sync.TransportResult attribute) (exlab_wizard.sync.transports.TransportResult attribute) (exlab_wizard.sync.verifier.VerifyResult attribute) (exlab_wizard.sync.VerifyResult attribute) on_clear (exlab_wizard.ui.pages.staging.StagingDockState attribute) on_clear_verified (exlab_wizard.ui.pages.staging.StagingDockState attribute) on_click (exlab_wizard.ui.notifications.ActionSpec attribute) on_force_sync (exlab_wizard.ui.pages.staging.StagingDockState attribute) on_plugin_failure() (exlab_wizard.plugins.base.Plugin method) (exlab_wizard.plugins.Plugin method) on_view_log (exlab_wizard.ui.pages.staging.StagingDockState attribute) open() (exlab_wizard.controller.session_store.SessionStore method) (exlab_wizard.controller.SessionStore method) (exlab_wizard.tray.window_launcher.WindowLauncher method) (exlab_wizard.tray.WindowLauncher method) OPEN_PROBLEMS (exlab_wizard.ui.keyboard.Shortcut attribute) OPEN_SETTINGS (exlab_wizard.ui.keyboard.Shortcut attribute) open_window() (exlab_wizard.tray.main.TrayApp method) (exlab_wizard.tray.TrayApp method) operation_columns() (in module exlab_wizard.ui.components.operations_modal) operation_id (exlab_wizard.ui.components.operations_modal.OperationRow attribute) OperationEntry (class in exlab_wizard.api.routers.operations) OperationRow (class in exlab_wizard.ui.components.operations_modal) operations (exlab_wizard.api.routers.operations.OperationsResponse attribute) operations_modal() (in module exlab_wizard.ui.components.operations_modal) OperationsResponse (class in exlab_wizard.api.routers.operations) operator (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.routers.problems.OverrideRequest attribute) (exlab_wizard.api.routers.problems.OverrideResponse attribute) (exlab_wizard.api.routers.problems.RevokeRequest attribute) (exlab_wizard.api.schemas.OverrideEntry attribute) (exlab_wizard.api.schemas.TombstoneEntry attribute) (exlab_wizard.controller.creation.ProjectCreateRequest attribute) (exlab_wizard.controller.creation.ReadmeContext attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ProjectCreateRequest attribute) (exlab_wizard.controller.ReadmeContext attribute) (exlab_wizard.controller.RunCreateRequest attribute) (exlab_wizard.readme.CoreFields attribute) (exlab_wizard.readme.generator.CoreFields attribute)

operators (exlab_wizard.config.models.Config attribute) OperatorsConfig (class in exlab_wizard.config.models) optional_variables (exlab_wizard.plugins.base.Plugin attribute) (exlab_wizard.plugins.Plugin attribute) (exlab_wizard.plugins.registry.PluginManifest attribute) options (exlab_wizard.config.models.READMEDefaultField attribute) (exlab_wizard.readme.generator.TemplateFieldDecl attribute) (exlab_wizard.readme.TemplateFieldDecl attribute) orchestrator (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.config.models.Config attribute) orchestrator_enabled (exlab_wizard.ui.pages.main.MainPageState attribute) orchestrator_staging_transport (exlab_wizard.config.models.EquipmentConfig attribute) OrchestratorBlock (class in exlab_wizard.api.schemas) OrchestratorConfig (class in exlab_wizard.config.models) OrchestratorStagingCleanup (class in exlab_wizard.config.models) OrchestratorStagingTransport (class in exlab_wizard.config.models) other (exlab_wizard.ui.keyboard.ShortcutBinding attribute) overflow_line() (in module exlab_wizard.ui.components.validation_summary) override_active (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.ui.components.validation_summary.ValidationSummary attribute) (exlab_wizard.validator.findings.Finding attribute) override_badge() (in module exlab_wizard.ui.components.override_badge) override_badge_props() (in module exlab_wizard.ui.components.override_badge) override_entry_to_dict() (in module exlab_wizard.api.schemas) override_line() (in module exlab_wizard.ui.components.validation_summary) override_operator (exlab_wizard.ui.components.validation_summary.ValidationSummary attribute) override_reason_snippet (exlab_wizard.ui.components.validation_summary.ValidationSummary attribute) override_set_at (exlab_wizard.ui.components.validation_summary.ValidationSummary attribute) OverrideEntry (class in exlab_wizard.api.schemas) OverrideRequest (class in exlab_wizard.api.routers.problems) OverrideResponse (class in exlab_wizard.api.routers.problems) owner (exlab_wizard.lims.LIMSProject attribute) (exlab_wizard.lims.schemas.LIMSProject attribute)

P

package_path (exlab_wizard.plugins.host.PluginRecord attribute), [1] panel_props() (in module exlab_wizard.ui.components.test_connection_panel) parse_manifest() (in module exlab_wizard.sync.verifier) parse_validation_override_entry() (in module exlab_wizard.api.schemas) password (exlab_wizard.api.setup.LIMSTestRequest attribute) path (exlab_wizard.api.routers.browse.EquipmentNode attribute) (exlab_wizard.api.routers.browse.ProjectNode attribute) (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.routers.browse.RunNode attribute) (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.orchestrator.StagedRunSummary attribute) (exlab_wizard.orchestrator.staging_query.StagedRunSummary attribute) (exlab_wizard.plugins.base.FileChange attribute), [1] (exlab_wizard.plugins.FileChange attribute), [1] (exlab_wizard.template.copier_driver.ResolvedTemplate attribute), [1] (exlab_wizard.ui.pages.problems.Finding attribute) paths (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.config.models.Config attribute) PathsBlock (class in exlab_wizard.api.schemas) PathsConfig (class in exlab_wizard.config.models) peak_memory_mb (exlab_wizard.api.schemas.PluginIsolation attribute) PENDING (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.SessionState attribute) pending_change_count (exlab_wizard.ui.pages.settings.SettingsState attribute) pending_input (exlab_wizard.api.routers.sessions.SessionHandleResponse attribute) (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] pending_value (exlab_wizard.ui.components.credential_field.CredentialState attribute) Phase (class in exlab_wizard.controller) (class in exlab_wizard.controller.state_machine) phase (exlab_wizard.api.events.FailedEvent attribute) (exlab_wizard.api.events.PhaseEvent attribute) (exlab_wizard.api.events.ProgressEvent attribute) (exlab_wizard.api.events.WarningEvent attribute) (exlab_wizard.ui.components.session_progress.PhaseRow attribute) PhaseEvent (class in exlab_wizard.api.events) PhaseRow (class in exlab_wizard.ui.components.session_progress) pick_free_port() (in module exlab_wizard.tray.server_runner) pid (exlab_wizard.tray.window_launcher.WindowLauncher property) (exlab_wizard.tray.WindowLauncher property) (exlab_wizard.window.main.ServerHandshake attribute) (exlab_wizard.window.ServerHandshake attribute) platform (exlab_wizard.tray.autostart.AutostartManager property) (exlab_wizard.tray.AutostartManager property) Plugin (class in exlab_wizard.plugins) (class in exlab_wizard.plugins.base) plugin (exlab_wizard.api.events.InputRequiredEvent attribute) (exlab_wizard.api.schemas.PluginApplied attribute) (exlab_wizard.plugins.host.InputRequiredPayload attribute) (exlab_wizard.ui.components.operations_modal.OperationRow attribute) plugin_class (exlab_wizard.plugins.registry.PluginRecord attribute) plugin_dir (exlab_wizard.config.models.PathsConfig attribute) plugin_host (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) plugin_host_ok (exlab_wizard.ui.pages.wizard_project.ProjectWizardState attribute) plugin_host_status (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) plugin_name (exlab_wizard.api.routers.operations.OperationEntry attribute) plugin_order (exlab_wizard.template.copier_driver.ResolvedTemplate attribute), [1] PLUGIN_PASS (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.SessionState attribute) PluginApplied (class in exlab_wizard.api.schemas) PluginContext (class in exlab_wizard.plugins) (class in exlab_wizard.plugins.base) PluginError, [1], [2] PluginHost (class in exlab_wizard.plugins.host) PluginInputRequired, [1], [2] PluginIsolation (class in exlab_wizard.api.schemas) PluginLogFrame (class in exlab_wizard.plugins) (class in exlab_wizard.plugins.logger) PluginLogger (class in exlab_wizard.plugins) (class in exlab_wizard.plugins.logger)

PluginManifest (class in exlab_wizard.plugins.registry) PluginPassResult (class in exlab_wizard.plugins.host) PluginPlan (class in exlab_wizard.plugins.registry) PluginRecord (class in exlab_wizard.plugins.host) (class in exlab_wizard.plugins.registry) PluginRegistry (class in exlab_wizard.plugins.registry) PluginRegistryProtocol (class in exlab_wizard.plugins.host) plugins (exlab_wizard.config.models.Config attribute) plugins_applied (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.schemas.CreationJson attribute) PluginsConfig (class in exlab_wizard.config.models) poll_once() (exlab_wizard.orchestrator.staging_watcher.StagingWatcher method) (exlab_wizard.orchestrator.StagingWatcher method) port (exlab_wizard.tray.server_runner.ServerRunner property) (exlab_wizard.tray.ServerRunner property) (exlab_wizard.window.main.ServerHandshake attribute) (exlab_wizard.window.ServerHandshake attribute) post_transform_all() (exlab_wizard.plugins.base.Plugin method) (exlab_wizard.plugins.Plugin method) POST_VALIDATE (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.SessionState attribute) pre_transform_all() (exlab_wizard.plugins.base.Plugin method) (exlab_wizard.plugins.Plugin method) preview_path_segments() (in module exlab_wizard.ui.pages.wizard_run) preview_step_clear() (in module exlab_wizard.ui.pages.wizard_project) primary_button_color() (in module exlab_wizard.ui.pages.wizard_run) primary_button_label() (in module exlab_wizard.ui.pages.wizard_run) primary_label (exlab_wizard.ui.pages.welcome.WelcomeCardSpec attribute) ProbeResult (class in exlab_wizard.api.setup) problem_class (exlab_wizard.api.routers.problems.OverrideRequest attribute) (exlab_wizard.api.routers.problems.OverrideResponse attribute) (exlab_wizard.api.schemas.OverrideEntry attribute) problems_badge_text() (in module exlab_wizard.ui.pages.main) problems_count_hard (exlab_wizard.ui.pages.main.MainPageState attribute) problems_count_soft (exlab_wizard.ui.pages.main.MainPageState attribute) ProblemsPageState (class in exlab_wizard.ui.pages.problems) ProblemsResponse (class in exlab_wizard.api.routers.problems) produced_at (exlab_wizard.lims.catalogue.OfflineCatalogue attribute) (exlab_wizard.lims.OfflineCatalogue attribute) produced_by (exlab_wizard.lims.catalogue.OfflineCatalogue attribute) (exlab_wizard.lims.OfflineCatalogue attribute) ProgressEvent (class in exlab_wizard.api.events) project (exlab_wizard.api.schemas.TestRunsJson attribute) (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) (exlab_wizard.readme.generator.SystemFields attribute) (exlab_wizard.readme.SystemFields attribute) (exlab_wizard.ui.components.operations_modal.OperationRow attribute) project_name (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.api.schemas.IngestJson attribute) (exlab_wizard.orchestrator.StagedRunSummary attribute) (exlab_wizard.orchestrator.staging_query.StagedRunSummary attribute) project_short_id (exlab_wizard.api.routers.operations.OperationEntry attribute) (exlab_wizard.controller.creation.ReadmeContext attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ReadmeContext attribute) (exlab_wizard.controller.RunCreateRequest attribute) ProjectCreateRequest (class in exlab_wizard.controller) (class in exlab_wizard.controller.creation) ProjectNode (class in exlab_wizard.api.routers.browse) (class in exlab_wizard.ui.components.tree) projects (exlab_wizard.api.routers.browse.EquipmentNode attribute) (exlab_wizard.lims.catalogue.OfflineCatalogue attribute) (exlab_wizard.lims.OfflineCatalogue attribute) ProjectWizardState (class in exlab_wizard.ui.pages.wizard_project) proposed_path (exlab_wizard.validator.engine.CreationValidationInput attribute), [1] publish_delta() (exlab_wizard.api.app.AuditChannel method) (exlab_wizard.api.AuditChannel method) publish_snapshot() (exlab_wizard.api.app.AuditChannel method) (exlab_wizard.api.AuditChannel method) push() (exlab_wizard.sync.transports.rclone.RcloneTransport method) (exlab_wizard.sync.transports.rsync_ssh.RsyncSshTransport method)

Q

query_problems() (exlab_wizard.validator.engine.Validator method) QUEUED (exlab_wizard.sync.nas_client.SyncJobState attribute) (exlab_wizard.sync.queue.SyncJobState attribute) (exlab_wizard.sync.SyncHandleState attribute) (exlab_wizard.sync.SyncJobState attribute) QUEUEING_NAS_SYNC (exlab_wizard.controller.Phase attribute) (exlab_wizard.controller.state_machine.Phase attribute)

quit() (exlab_wizard.tray.quit_coordinator.QuitCoordinator method) (exlab_wizard.tray.QuitCoordinator method) quit_coordinator (exlab_wizard.tray.main.TrayApp attribute) (exlab_wizard.tray.TrayApp attribute) QuitCoordinator (class in exlab_wizard.tray) (class in exlab_wizard.tray.quit_coordinator)

R

raw (exlab_wizard.ui.components.test_connection_panel.TestConnectionResult attribute) raw_manifest (exlab_wizard.template.copier_driver.ResolvedTemplate attribute), [1] rclone_remote (exlab_wizard.config.models.RcloneTransport attribute) rclone_remote_path (exlab_wizard.config.models.RcloneTransport attribute) RcloneTransport (class in exlab_wizard.config.models) (class in exlab_wizard.sync.transports.rclone) read_catalogue() (in module exlab_wizard.lims) (in module exlab_wizard.lims.catalogue) read_creation_snapshot() (exlab_wizard.cache.creation_writer.CreationWriter method) read_equipment() (exlab_wizard.cache.equipment.EquipmentCacheWriter method) read_ingest() (exlab_wizard.cache.ingest_writer.IngestWriter method) read_server_handshake() (in module exlab_wizard.window) (in module exlab_wizard.window.main) read_test_runs_marker() (exlab_wizard.cache.equipment.EquipmentCacheWriter method) readme (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.config.models.Config attribute) readme_extra (exlab_wizard.controller.creation.ProjectCreateRequest attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ProjectCreateRequest attribute) (exlab_wizard.controller.RunCreateRequest attribute) readme_fields (exlab_wizard.ui.pages.wizard_project.ProjectWizardState attribute) (exlab_wizard.ui.pages.wizard_run.RunWizardState attribute) (exlab_wizard.validator.engine.CreationValidationInput attribute), [1] READMEConfig (class in exlab_wizard.config.models) ReadmeContext (class in exlab_wizard.controller) (class in exlab_wizard.controller.creation) (class in exlab_wizard.readme) (class in exlab_wizard.readme.generator) READMEDefaultField (class in exlab_wizard.config.models) ReadmeFieldsJson (class in exlab_wizard.api.schemas) ReadmeGenerator (class in exlab_wizard.readme) (class in exlab_wizard.readme.generator) ReadmeGeneratorProtocol (class in exlab_wizard.controller) (class in exlab_wizard.controller.creation) ready (exlab_wizard.api.routers.config.ConfigUpdateResponse attribute) (exlab_wizard.api.setup.SetupStatusResponse attribute) reason (exlab_wizard.api.events.InputRequiredEvent attribute) (exlab_wizard.api.routers.problems.OverrideRequest attribute) (exlab_wizard.api.routers.problems.OverrideResponse attribute) (exlab_wizard.api.routers.problems.RevokeRequest attribute) (exlab_wizard.api.schemas.OverrideEntry attribute) (exlab_wizard.api.schemas.TombstoneEntry attribute) (exlab_wizard.api.setup.ProbeResult attribute) (exlab_wizard.errors.PluginInputRequired property) (exlab_wizard.lims.HealthStatus attribute) (exlab_wizard.lims.schemas.HealthStatus attribute) (exlab_wizard.plugins.base.PluginInputRequired property) (exlab_wizard.plugins.host.InputRequiredPayload attribute) (exlab_wizard.plugins.PluginInputRequired property) RECONNECTING (exlab_wizard.ui.components.banner_stack.BannerId attribute) (exlab_wizard.ui.notifications.BannerId attribute) record (exlab_wizard.plugins.registry.PluginPlan attribute) record_failure() (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) recorded_at (exlab_wizard.api.routers.problems.OverrideResponse attribute) (exlab_wizard.api.schemas.OverrideEntry attribute) (exlab_wizard.api.schemas.TombstoneEntry attribute) redact_secret() (in module exlab_wizard.logging.format) REFRESH_TREE (exlab_wizard.ui.keyboard.Shortcut attribute) RefreshResponse (class in exlab_wizard.api.routers.problems) register() (exlab_wizard.tray.autostart.AutostartManager method) (exlab_wizard.tray.AutostartManager method) (exlab_wizard.ui.keyboard.ShortcutRegistry method) register_exception_handlers() (in module exlab_wizard.api.errors) register_static_assets() (in module exlab_wizard.ui.theme) register_theme() (in module exlab_wizard.ui.theme) registered_plugin_count (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) RegistryReport (class in exlab_wizard.plugins.registry) rejected (exlab_wizard.plugins.registry.RegistryReport attribute) reload() (exlab_wizard.plugins.registry.PluginRegistry method) remote_path (exlab_wizard.config.models.RsyncSshTransport attribute) removed (exlab_wizard.api.events.DeltaEvent attribute) render() (exlab_wizard.template.copier_driver.TemplateEngine method) render_main_page() (in module exlab_wizard.ui.pages.main) render_problems_page() (in module exlab_wizard.ui.pages.problems) render_project_wizard() (in module exlab_wizard.ui.pages.wizard_project) render_run_wizard() (in module exlab_wizard.ui.pages.wizard_run) render_settings_page() (in module exlab_wizard.ui.pages.settings) render_staging_dock() (in module exlab_wizard.ui.pages.staging) render_welcome_page() (in module exlab_wizard.ui.pages.welcome) RENDERING (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.SessionState attribute) RENDERING_TEMPLATE (exlab_wizard.controller.Phase attribute) (exlab_wizard.controller.state_machine.Phase attribute) RenderResult (class in exlab_wizard.template.copier_driver) request (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] request_quit() (exlab_wizard.tray.main.TrayApp method) (exlab_wizard.tray.TrayApp method) require_schema_major() (in module exlab_wizard.cache.equipment) required (exlab_wizard.config.models.READMEDefaultField attribute) (exlab_wizard.readme.generator.TemplateFieldDecl attribute) (exlab_wizard.readme.TemplateFieldDecl attribute)

required_variables (exlab_wizard.plugins.base.Plugin attribute) (exlab_wizard.plugins.Plugin attribute) (exlab_wizard.plugins.registry.PluginManifest attribute) reset_for_tests() (in module exlab_wizard.ui.notifications) reset_to_queued() (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) resolve() (exlab_wizard.template.copier_driver.TemplateEngine method) (in module exlab_wizard.ui.keyboard) resolve_assets_dir() (in module exlab_wizard.ui.theme) ResolvedTemplate (class in exlab_wizard.template.copier_driver) result (exlab_wizard.api.events.DoneEvent attribute) (exlab_wizard.api.routers.sessions.SessionHandleResponse attribute) (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] resume() (exlab_wizard.controller.creation.CreationController method) (exlab_wizard.controller.CreationController method) retain_cache (exlab_wizard.config.models.NASCleanupConfig attribute) retain_hours (exlab_wizard.config.models.OrchestratorStagingCleanup attribute) retry() (exlab_wizard.sync.nas_client.NASSyncClient method) (exlab_wizard.sync.NASSyncClient method) retry_attempts (exlab_wizard.config.models.SyncConfig attribute) returncode (exlab_wizard.sync.TransportResult attribute) (exlab_wizard.sync.transports.TransportResult attribute) revoked (exlab_wizard.api.routers.problems.OverrideResponse attribute) (exlab_wizard.api.schemas.OverrideEntry attribute) (exlab_wizard.api.schemas.TombstoneEntry attribute) RevokeRequest (class in exlab_wizard.api.routers.problems) revokes (exlab_wizard.api.routers.problems.RevokeRequest attribute) (exlab_wizard.api.schemas.TombstoneEntry attribute) role (exlab_wizard.lims.LIMSUser attribute) (exlab_wizard.lims.schemas.LIMSUser attribute) row_props() (in module exlab_wizard.ui.pages.staging) rows (exlab_wizard.ui.pages.staging.StagingDockState attribute) RsyncSshTransport (class in exlab_wizard.config.models) (class in exlab_wizard.sync.transports.rsync_ssh) rule (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.ui.components.validation_summary.FindingExcerpt attribute) (exlab_wizard.validator.findings.Finding attribute) rule_class (exlab_wizard.ui.pages.problems.Finding attribute) rule_detail (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.validator.findings.Finding attribute) run (exlab_wizard.readme.generator.SystemFields attribute) (exlab_wizard.readme.SystemFields attribute) (exlab_wizard.ui.components.operations_modal.OperationRow attribute) run() (exlab_wizard.tray.main.TrayApp method) (exlab_wizard.tray.TrayApp method) run_date (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.RunCreateRequest attribute) run_kind (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.routers.staging.StagedRunRow attribute) (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.api.schemas.IngestJson attribute) (exlab_wizard.api.schemas.TestRunsJson attribute) (exlab_wizard.controller.creation.ReadmeContext attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ReadmeContext attribute) (exlab_wizard.controller.RunCreateRequest attribute) (exlab_wizard.orchestrator.StagedRunSummary attribute) (exlab_wizard.orchestrator.staging_query.StagedRunSummary attribute) (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) (exlab_wizard.readme.generator.SystemFields attribute) (exlab_wizard.readme.SystemFields attribute) (exlab_wizard.ui.components.tree.RunNode attribute) (exlab_wizard.ui.pages.wizard_run.RunWizardState attribute) (exlab_wizard.validator.engine.CreationValidationInput attribute), [1] run_label (exlab_wizard.api.routers.operations.OperationEntry attribute) (exlab_wizard.ui.pages.problems.Finding attribute) run_pass() (exlab_wizard.plugins.host.PluginHost method) run_path (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.api.routers.staging.ClearResponse attribute) (exlab_wizard.api.routers.staging.ForceSyncResponse attribute) (exlab_wizard.api.schemas.IngestJson attribute) (exlab_wizard.sync.nas_client.SyncJobHandle attribute) (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobHandle attribute) (exlab_wizard.sync.SyncJobRow attribute) (exlab_wizard.validator.findings.Finding attribute) run_scope (exlab_wizard.api.schemas.TemplateBlock attribute) (exlab_wizard.template.copier_driver.ResolvedTemplate attribute), [1] run_window() (in module exlab_wizard.window) (in module exlab_wizard.window.pywebview_app) RunCreateRequest (class in exlab_wizard.controller) (class in exlab_wizard.controller.creation) RunDetail (class in exlab_wizard.api.routers.browse) RUNNING (exlab_wizard.sync.nas_client.SyncJobState attribute) (exlab_wizard.sync.queue.SyncJobState attribute) (exlab_wizard.sync.SyncJobState attribute) RUNNING_PLUGINS (exlab_wizard.controller.Phase attribute) (exlab_wizard.controller.state_machine.Phase attribute) RunNode (class in exlab_wizard.api.routers.browse) (class in exlab_wizard.ui.components.tree) runs (exlab_wizard.api.routers.browse.ProjectNode attribute) (exlab_wizard.api.routers.staging.StagingListResponse attribute) RunWizardState (class in exlab_wizard.ui.pages.wizard_run)

S

save_button_label() (in module exlab_wizard.ui.pages.settings) save_config (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) save_config() (in module exlab_wizard.config.loader) schedule (exlab_wizard.config.models.BandwidthConfig attribute) schedule_props() (in module exlab_wizard.ui.components.bandwidth_schedule_editor) ScheduleWindow (class in exlab_wizard.ui.components.bandwidth_schedule_editor) schema_version (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.api.schemas.EquipmentJson attribute) (exlab_wizard.api.schemas.IngestJson attribute) (exlab_wizard.api.schemas.ReadmeFieldsJson attribute) (exlab_wizard.api.schemas.TestRunsJson attribute) (exlab_wizard.lims.catalogue.OfflineCatalogue attribute) (exlab_wizard.lims.OfflineCatalogue attribute) schema_versions (exlab_wizard.api.health.HealthResponse attribute) SchemaMajorMismatchError scope (exlab_wizard.ui.pages.problems.ProblemsPageState attribute) search (exlab_wizard.ui.components.tree.TreeFilters attribute) (exlab_wizard.ui.pages.problems.ProblemsPageState attribute) secondary_label (exlab_wizard.ui.pages.welcome.WelcomeCardSpec attribute) section_has_warning() (in module exlab_wizard.ui.pages.settings) section_is_dirty() (in module exlab_wizard.ui.pages.settings) segment_spec() (in module exlab_wizard.ui.components.status_bar_segment) SegmentSpec (class in exlab_wizard.ui.components.status_bar_segment) select_active_overrides() (in module exlab_wizard.cache.creation_writer) selected_equipment (exlab_wizard.ui.pages.wizard_project.ProjectWizardState attribute) (exlab_wizard.ui.pages.wizard_run.RunWizardState attribute) selected_lims_short_id (exlab_wizard.ui.pages.wizard_project.ProjectWizardState attribute) selected_node (exlab_wizard.ui.pages.main.MainPageState attribute) selected_project_short_id (exlab_wizard.ui.pages.wizard_run.RunWizardState attribute) selected_template (exlab_wizard.ui.pages.wizard_project.ProjectWizardState attribute) (exlab_wizard.ui.pages.wizard_run.RunWizardState attribute) sentinel_filename (exlab_wizard.config.models.EquipmentConfig attribute) server_runner (exlab_wizard.tray.main.TrayApp attribute) (exlab_wizard.tray.TrayApp attribute) ServerHandshake (class in exlab_wizard.window) (class in exlab_wizard.window.main) ServerRunner (class in exlab_wizard.tray) (class in exlab_wizard.tray.server_runner) Session (class in exlab_wizard.controller) (class in exlab_wizard.controller.session_store) session_id (exlab_wizard.api.routers.sessions.SessionHandleResponse attribute) (exlab_wizard.controller.creation.SessionHandle attribute) (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] (exlab_wizard.controller.SessionHandle attribute) session_progress() (in module exlab_wizard.ui.components.session_progress) session_store (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) (exlab_wizard.controller.creation.CreationController property) (exlab_wizard.controller.CreationController property) session_store_snapshot (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) SessionHandle (class in exlab_wizard.controller) (class in exlab_wizard.controller.creation) SessionHandleResponse (class in exlab_wizard.api.routers.sessions) SessionState (class in exlab_wizard.controller) (class in exlab_wizard.controller.state_machine) SessionStore (class in exlab_wizard.controller) (class in exlab_wizard.controller.session_store) set_password() (exlab_wizard.lims.keyring_store.KeyringStore method) (exlab_wizard.lims.KeyringStore method) set_run_context() (in module exlab_wizard.logging) (in module exlab_wizard.logging.context) SETTINGS (exlab_wizard.ui.components.banner_stack.ContainerId attribute) (exlab_wizard.ui.notifications.ContainerId attribute) SettingsState (class in exlab_wizard.ui.pages.settings) SETUP_INCOMPLETE (exlab_wizard.ui.components.banner_stack.BannerId attribute) (exlab_wizard.ui.notifications.BannerId attribute) setup_incomplete (exlab_wizard.ui.pages.main.MainPageState attribute) setup_incomplete_banner_props() (in module exlab_wizard.ui.pages.main) setup_state (exlab_wizard.api.health.HealthResponse attribute) setup_state_gate() (in module exlab_wizard.api.setup) SetupIncompleteError SetupStatusResponse (class in exlab_wizard.api.setup) Severity (class in exlab_wizard.ui.components.banner_stack) (class in exlab_wizard.ui.notifications) severity (exlab_wizard.ui.pages.problems.Finding attribute) severity_chip_definitions() (in module exlab_wizard.ui.pages.problems) severity_chips (exlab_wizard.ui.pages.problems.ProblemsPageState attribute) shift (exlab_wizard.ui.keyboard.KeyCombo attribute) short_id (exlab_wizard.api.routers.browse.ProjectNode attribute) (exlab_wizard.api.schemas.LimsProjectBlock attribute) (exlab_wizard.lims.LIMSProject attribute) (exlab_wizard.lims.schemas.LIMSProject attribute) (exlab_wizard.ui.components.tree.ProjectNode attribute) Shortcut (class in exlab_wizard.ui.keyboard) shortcut (exlab_wizard.ui.keyboard.ShortcutBinding attribute) ShortcutBinding (class in exlab_wizard.ui.keyboard) ShortcutRegistry (class in exlab_wizard.ui.keyboard) show_banner() (in module exlab_wizard.ui.notifications) show_warning_glyph (exlab_wizard.ui.components.status_bar_segment.SegmentSpec attribute) shutdown() (exlab_wizard.tray.main.TrayApp method) (exlab_wizard.tray.TrayApp method) snapshot_status() (in module exlab_wizard.tray) (in module exlab_wizard.tray.status) SnapshotEvent (class in exlab_wizard.api.events) soft_count (exlab_wizard.ui.components.validation_summary.ValidationSummary attribute) sort_rows() (in module exlab_wizard.ui.components.operations_modal) source (exlab_wizard.api.schemas.LimsProjectBlock attribute) source_path (exlab_wizard.api.schemas.TemplateBlock attribute) (exlab_wizard.plugins.registry.PluginRecord attribute) source_root (exlab_wizard.plugins.registry.PluginRecord attribute) ssh_key_path (exlab_wizard.config.models.RsyncSshTransport attribute) ssh_target (exlab_wizard.config.models.RsyncSshTransport attribute) StagedRunRow (class in exlab_wizard.api.routers.staging) StagedRunSummary (class in exlab_wizard.orchestrator) (class in exlab_wizard.orchestrator.staging_query) staging_cleanup (exlab_wizard.config.models.OrchestratorConfig attribute) staging_dock (exlab_wizard.ui.pages.main.MainPageState attribute) STAGING_DOCK_HEIGHT_PX (in module exlab_wizard.ui.pages.staging) staging_root (exlab_wizard.config.models.OrchestratorConfig attribute) staging_subpath (exlab_wizard.config.models.OrchestratorStagingTransport attribute) STAGING_TABLE_COLUMNS (in module exlab_wizard.ui.pages.staging) staging_watcher (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute)

StagingDockState (class in exlab_wizard.ui.pages.staging) StagingListResponse (class in exlab_wizard.api.routers.staging) StagingWatcher (class in exlab_wizard.orchestrator) (class in exlab_wizard.orchestrator.staging_watcher) start() (exlab_wizard.orchestrator.staging_watcher.StagingWatcher method) (exlab_wizard.orchestrator.StagingWatcher method) (exlab_wizard.tray.server_runner.ServerRunner method) (exlab_wizard.tray.ServerRunner method) (exlab_wizard.tray.status.StatusTicker method) (exlab_wizard.tray.StatusTicker method) start_server() (exlab_wizard.tray.main.TrayApp method) (exlab_wizard.tray.TrayApp method) started_at (exlab_wizard.api.routers.operations.OperationEntry attribute) (exlab_wizard.ui.components.operations_modal.OperationRow attribute) (exlab_wizard.window.main.ServerHandshake attribute) (exlab_wizard.window.ServerHandshake attribute) state (exlab_wizard.api.routers.config.ConfigUpdateResponse attribute) (exlab_wizard.api.routers.operations.OperationEntry attribute) (exlab_wizard.api.routers.sessions.SessionHandleResponse attribute) (exlab_wizard.api.routers.staging.ForceSyncResponse attribute) (exlab_wizard.api.setup.SetupStatusResponse attribute) (exlab_wizard.controller.creation.SessionHandle attribute) (exlab_wizard.controller.Session attribute), [1] (exlab_wizard.controller.session_store.Session attribute), [1] (exlab_wizard.controller.SessionHandle attribute) (exlab_wizard.sync.nas_client.SyncJobHandle attribute) (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobHandle attribute) (exlab_wizard.sync.SyncJobRow attribute) (exlab_wizard.ui.components.credential_field.CredentialState attribute) (exlab_wizard.ui.components.operations_modal.OperationRow attribute) (exlab_wizard.ui.components.status_bar_segment.SegmentSpec attribute) (exlab_wizard.ui.pages.problems.Finding attribute) state_chip_definitions() (in module exlab_wizard.ui.pages.problems) state_chips (exlab_wizard.ui.pages.problems.ProblemsPageState attribute) state_file (exlab_wizard.tray.server_runner.ServerRunner property) (exlab_wizard.tray.ServerRunner property) state_glyph() (in module exlab_wizard.ui.components.operations_modal) state_pill_props() (in module exlab_wizard.ui.pages.staging) state_to_phase() (in module exlab_wizard.controller) (in module exlab_wizard.controller.state_machine) status (exlab_wizard.api.health.HealthResponse attribute) (exlab_wizard.api.schemas.PluginApplied attribute) (exlab_wizard.lims.LIMSProject attribute) (exlab_wizard.lims.schemas.LIMSProject attribute) (exlab_wizard.ui.components.tree.ProjectNode attribute) status() (exlab_wizard.controller.creation.CreationController method) (exlab_wizard.controller.CreationController method) (exlab_wizard.orchestrator.staging_watcher.NASSyncLike method) (exlab_wizard.sync.nas_client.NASSyncClient method) (exlab_wizard.sync.NASSyncClient method) status_bar_segment() (in module exlab_wizard.ui.components.status_bar_segment) status_ticker (exlab_wizard.tray.main.TrayApp attribute) (exlab_wizard.tray.TrayApp attribute) StatusSnapshot (class in exlab_wizard.tray) (class in exlab_wizard.tray.status) StatusTicker (class in exlab_wizard.tray) (class in exlab_wizard.tray.status) stderr (exlab_wizard.sync.TransportResult attribute) (exlab_wizard.sync.transports.TransportResult attribute) stdout (exlab_wizard.sync.TransportResult attribute) (exlab_wizard.sync.transports.TransportResult attribute) stop() (exlab_wizard.orchestrator.staging_watcher.StagingWatcher method) (exlab_wizard.orchestrator.StagingWatcher method) (exlab_wizard.tray.server_runner.ServerRunner method) (exlab_wizard.tray.ServerRunner method) (exlab_wizard.tray.status.StatusTicker method) (exlab_wizard.tray.StatusTicker method) StructuredTagFormatter (class in exlab_wizard.logging.format) style_hints (exlab_wizard.ui.components.tree.TreeNode attribute) subscribe() (exlab_wizard.api.app.AuditChannel method) (exlab_wizard.api.AuditChannel method) (exlab_wizard.controller.creation.CreationController method) (exlab_wizard.controller.CreationController method) SUCCESS (exlab_wizard.ui.components.banner_stack.Severity attribute) success (exlab_wizard.ui.components.test_connection_panel.TestConnectionResult attribute) SUCCESS (exlab_wizard.ui.notifications.Severity attribute) summary (exlab_wizard.plugins.base.FileChange attribute), [1] (exlab_wizard.plugins.FileChange attribute), [1] supported_extensions (exlab_wizard.plugins.base.Plugin attribute) (exlab_wizard.plugins.host.PluginRecord attribute), [1] (exlab_wizard.plugins.Plugin attribute) (exlab_wizard.plugins.registry.PluginManifest attribute) suspended_reason (exlab_wizard.api.routers.operations.OperationEntry attribute) sync (exlab_wizard.config.models.Config attribute) SYNC_BLOCKED_ON_SUCCESS_CARD (exlab_wizard.ui.components.banner_stack.BannerId attribute) (exlab_wizard.ui.notifications.BannerId attribute) sync_queue_depth (exlab_wizard.tray.status.StatusSnapshot attribute) (exlab_wizard.tray.StatusSnapshot attribute) SYNC_QUEUED (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.SessionState attribute) sync_status (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.routers.browse.RunNode attribute) (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.ui.components.tree.RunNode attribute) (exlab_wizard.ui.components.tree.TreeNode attribute) sync_status_icon() (in module exlab_wizard.ui.components.sync_status_icon) sync_status_props() (in module exlab_wizard.ui.components.sync_status_icon) SyncConfig (class in exlab_wizard.config.models) synced_under_prior_policy (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.validator.findings.Finding attribute) SyncHandleState (class in exlab_wizard.sync) SyncJobHandle (class in exlab_wizard.sync) (class in exlab_wizard.sync.nas_client) SyncJobRow (class in exlab_wizard.sync) (class in exlab_wizard.sync.queue) SyncJobState (class in exlab_wizard.sync) (class in exlab_wizard.sync.nas_client) (class in exlab_wizard.sync.queue) SyncQueue (class in exlab_wizard.sync) (class in exlab_wizard.sync.queue) SyncStatusIconExtraKind (in module exlab_wizard.ui.components.sync_status_icon) SyncStatusOrIcon (in module exlab_wizard.ui.components.sync_status_icon) system (exlab_wizard.readme.generator.ReadmeContext attribute) (exlab_wizard.readme.ReadmeContext attribute) system_fields (exlab_wizard.api.schemas.ReadmeFieldsJson attribute) SystemFields (class in exlab_wizard.readme) (class in exlab_wizard.readme.generator)

T

template (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.controller.creation.ReadmeContext attribute) (exlab_wizard.controller.ReadmeContext attribute) (exlab_wizard.readme.generator.SystemFields attribute) (exlab_wizard.readme.SystemFields attribute) template_field_decls (exlab_wizard.readme.generator.ReadmeContext attribute) (exlab_wizard.readme.ReadmeContext attribute) template_fields (exlab_wizard.api.schemas.ReadmeFieldsJson attribute) (exlab_wizard.readme.generator.ReadmeContext attribute) (exlab_wizard.readme.ReadmeContext attribute) template_name (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) template_path (exlab_wizard.controller.creation.ProjectCreateRequest attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ProjectCreateRequest attribute) (exlab_wizard.controller.RunCreateRequest attribute) template_required_field_ids (exlab_wizard.validator.engine.CreationValidationInput attribute), [1] template_variables (exlab_wizard.ui.pages.wizard_project.ProjectWizardState attribute) (exlab_wizard.ui.pages.wizard_run.RunWizardState attribute) template_version (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) TemplateBlock (class in exlab_wizard.api.schemas) TemplateCoreFieldRedeclaredError TemplateEngine (class in exlab_wizard.template.copier_driver) TemplateFieldDecl (class in exlab_wizard.readme) (class in exlab_wizard.readme.generator) TemplateLoadError templates_dir (exlab_wizard.config.models.PathsConfig attribute) test_connection_panel() (in module exlab_wizard.ui.components.test_connection_panel) test_run_badge() (in module exlab_wizard.ui.components.test_run_badge) test_run_badge_props() (in module exlab_wizard.ui.components.test_run_badge) test_runs (exlab_wizard.api.routers.browse.ProjectNode attribute) (exlab_wizard.ui.components.tree.TreeFilters attribute) TestConnectionResult (class in exlab_wizard.ui.components.test_connection_panel) TestEquipmentRequest (in module exlab_wizard.api.setup) TestLIMSRequest (in module exlab_wizard.api.setup) TestResult (in module exlab_wizard.api.setup) TestRunsJson (class in exlab_wizard.api.schemas)

tick_once() (exlab_wizard.tray.status.StatusTicker method) (exlab_wizard.tray.StatusTicker method) tier (exlab_wizard.api.routers.problems.FindingResponse attribute) (exlab_wizard.validator.findings.Finding attribute) time_estimate (exlab_wizard.ui.pages.welcome.WelcomeCardSpec attribute) timeout_seconds (exlab_wizard.plugins.host.PluginRecord attribute), [1] title_text() (in module exlab_wizard.ui.pages.wizard_run) to (exlab_wizard.config.models.BandwidthWindow attribute) to_dict() (exlab_wizard.validator.findings.Finding method) to_nicegui_nodes() (in module exlab_wizard.ui.components.tree) to_time (exlab_wizard.ui.components.bandwidth_schedule_editor.ScheduleWindow attribute) toggle() (in module exlab_wizard.ui.components.filter_chips) tombstone_entry_to_dict() (in module exlab_wizard.api.schemas) TombstoneEntry (class in exlab_wizard.api.schemas) total (exlab_wizard.api.events.ProgressEvent attribute) transform() (exlab_wizard.plugins.base.Plugin method) (exlab_wizard.plugins.Plugin method) transition() (exlab_wizard.controller.session_store.SessionStore method) (exlab_wizard.controller.SessionStore method) (exlab_wizard.sync.queue.SyncQueue method) (exlab_wizard.sync.SyncQueue method) transport (exlab_wizard.api.schemas.IngestJson attribute) (exlab_wizard.config.models.EquipmentConfig attribute) TransportError, [1] TransportErrorKind (class in exlab_wizard.sync) (class in exlab_wizard.sync.transports) TransportResult (class in exlab_wizard.sync) (class in exlab_wizard.sync.transports) TrayApp (class in exlab_wizard.tray) (class in exlab_wizard.tray.main) TreeFilters (class in exlab_wizard.ui.components.tree) TreeNode (class in exlab_wizard.ui.components.tree) TreeResponse (class in exlab_wizard.api.routers.browse) TriggerKind (in module exlab_wizard.tray.notifications) type (exlab_wizard.config.models.OrchestratorStagingTransport attribute) (exlab_wizard.config.models.RcloneTransport attribute) (exlab_wizard.config.models.READMEDefaultField attribute) (exlab_wizard.config.models.RsyncSshTransport attribute) (exlab_wizard.readme.generator.TemplateFieldDecl attribute) (exlab_wizard.readme.TemplateFieldDecl attribute)

U

uid (exlab_wizard.api.schemas.LimsProjectBlock attribute) (exlab_wizard.lims.LIMSProject attribute) (exlab_wizard.lims.LIMSUser attribute) (exlab_wizard.lims.schemas.LIMSProject attribute) (exlab_wizard.lims.schemas.LIMSUser attribute) UNKNOWN (exlab_wizard.sync.TransportErrorKind attribute) (exlab_wizard.sync.transports.TransportErrorKind attribute)

unregister() (exlab_wizard.tray.autostart.AutostartManager method) (exlab_wizard.tray.AutostartManager method) update_creation_atomic() (exlab_wizard.cache.creation_writer.CreationWriter method) upload_mbps (exlab_wizard.config.models.BandwidthConfig attribute) (exlab_wizard.ui.components.bandwidth_schedule_editor.ScheduleWindow attribute) upsert_many() (exlab_wizard.lims.cache.LIMSCache method) (exlab_wizard.lims.LIMSCache method)

V

validate_creation() (exlab_wizard.validator.engine.Validator method) validate_override_reason() (in module exlab_wizard.ui.pages.problems) validate_variables() (exlab_wizard.plugins.base.Plugin method) (exlab_wizard.plugins.Plugin method) validate_window() (in module exlab_wizard.ui.components.bandwidth_schedule_editor) VALIDATING (exlab_wizard.controller.SessionState attribute) (exlab_wizard.controller.state_machine.SessionState attribute) VALIDATING_INPUTS (exlab_wizard.controller.Phase attribute) (exlab_wizard.controller.state_machine.Phase attribute) VALIDATING_POST_CREATION (exlab_wizard.controller.Phase attribute) (exlab_wizard.controller.state_machine.Phase attribute) validation_overrides (exlab_wizard.api.routers.browse.RunDetail attribute) (exlab_wizard.api.schemas.CreationJson attribute) validation_summary() (in module exlab_wizard.ui.components.validation_summary) ValidationError ValidationSummary (class in exlab_wizard.ui.components.validation_summary) Validator (class in exlab_wizard.validator.engine) validator (exlab_wizard.api.app.AppDependencies attribute) (exlab_wizard.api.AppDependencies attribute) (exlab_wizard.config.models.Config attribute) validator_findings (exlab_wizard.ui.pages.wizard_project.ProjectWizardState attribute) (exlab_wizard.ui.pages.wizard_run.RunWizardState attribute) ValidatorConfig (class in exlab_wizard.config.models) value (exlab_wizard.readme.CustomField attribute) (exlab_wizard.readme.generator.CustomField attribute) (exlab_wizard.validator.engine.AuditScopeEquipment attribute) (exlab_wizard.validator.engine.AuditScopeProject attribute) variables (exlab_wizard.api.schemas.CreationJson attribute) (exlab_wizard.controller.creation.ProjectCreateRequest attribute) (exlab_wizard.controller.creation.ReadmeContext attribute) (exlab_wizard.controller.creation.RunCreateRequest attribute) (exlab_wizard.controller.ProjectCreateRequest attribute) (exlab_wizard.controller.ReadmeContext attribute) (exlab_wizard.controller.RunCreateRequest attribute) (exlab_wizard.plugins.base.PluginContext attribute) (exlab_wizard.plugins.PluginContext attribute) (exlab_wizard.validator.engine.CreationValidationInput attribute), [1]

VERIFIED (exlab_wizard.sync.nas_client.SyncJobState attribute) (exlab_wizard.sync.queue.SyncJobState attribute) (exlab_wizard.sync.SyncJobState attribute) verified_at (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) Verifier (class in exlab_wizard.sync) (class in exlab_wizard.sync.verifier) verify_against_local() (exlab_wizard.sync.Verifier method) (exlab_wizard.sync.verifier.Verifier method) verify_against_remote() (exlab_wizard.sync.Verifier method) (exlab_wizard.sync.verifier.Verifier method) verify_passes (exlab_wizard.sync.queue.SyncJobRow attribute) (exlab_wizard.sync.SyncJobRow attribute) VerifyResult (class in exlab_wizard.sync) (class in exlab_wizard.sync.verifier) version (exlab_wizard.api.health.HealthResponse attribute) (exlab_wizard.api.schemas.PluginApplied attribute) (exlab_wizard.api.schemas.TemplateBlock attribute) (exlab_wizard.plugins.base.Plugin attribute) (exlab_wizard.plugins.host.PluginRecord attribute), [1] (exlab_wizard.plugins.Plugin attribute) (exlab_wizard.plugins.registry.PluginManifest attribute)

W

WARNING (exlab_wizard.ui.components.banner_stack.Severity attribute) (exlab_wizard.ui.notifications.Severity attribute) warning() (exlab_wizard.plugins.HostPluginLogger method) (exlab_wizard.plugins.logger.HostPluginLogger method) (exlab_wizard.plugins.logger.PluginLogger method) (exlab_wizard.plugins.logger.WorkerPluginLogger method) (exlab_wizard.plugins.PluginLogger method) (exlab_wizard.plugins.WorkerPluginLogger method) WarningEvent (class in exlab_wizard.api.events) welcome_card_spec() (in module exlab_wizard.ui.pages.welcome) WelcomeCardSpec (class in exlab_wizard.ui.pages.welcome) window_launcher (exlab_wizard.tray.main.TrayApp attribute) (exlab_wizard.tray.TrayApp attribute) WindowLauncher (class in exlab_wizard.tray) (class in exlab_wizard.tray.window_launcher)

windows (exlab_wizard.ui.components.bandwidth_schedule_editor.BandwidthSchedule attribute) WIZARD (exlab_wizard.ui.components.banner_stack.ContainerId attribute) (exlab_wizard.ui.notifications.ContainerId attribute) WIZARD_CANCEL (exlab_wizard.ui.keyboard.Shortcut attribute) WIZARD_NEXT (exlab_wizard.ui.keyboard.Shortcut attribute) WorkerPluginLogger (class in exlab_wizard.plugins) (class in exlab_wizard.plugins.logger) write_catalogue() (in module exlab_wizard.lims) (in module exlab_wizard.lims.catalogue) write_creation() (exlab_wizard.cache.creation_writer.CreationWriter method) write_equipment() (exlab_wizard.cache.equipment.EquipmentCacheWriter method) write_ingest() (exlab_wizard.cache.ingest_writer.IngestWriter method) write_test_runs_marker() (exlab_wizard.cache.equipment.EquipmentCacheWriter method) WRITING_CACHE (exlab_wizard.controller.Phase attribute) (exlab_wizard.controller.state_machine.Phase attribute)